Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC28BQ9BUN5 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC28BQ9BUN5 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC28BQ9BUN5 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC28BQ9BUN5 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC28BQ9BUN5 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC28BQ9BUN5 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC28BQ9BUN5 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC28BQ9BUN5 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC28BQ9BUN5 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC28BQ9BUN5 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.02■□□□□ 0.8
CCDC28BQ9BUN5 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC28BQ9BUN5 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC28BQ9BUN5 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CCDC28BQ9BUN5 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CCDC28BQ9BUN5 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC28BQ9BUN5 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC28BQ9BUN5 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC28BQ9BUN5 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC28BQ9BUN5 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.02■□□□□ 0.79
CCDC28BQ9BUN5 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
CCDC28BQ9BUN5 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC28BQ9BUN5 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC28BQ9BUN5 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC28BQ9BUN5 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC28BQ9BUN5 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC28BQ9BUN5 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC28BQ9BUN5 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC28BQ9BUN5 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC28BQ9BUN5 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC28BQ9BUN5 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC28BQ9BUN5 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC28BQ9BUN5 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CCDC28BQ9BUN5 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CCDC28BQ9BUN5 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC28BQ9BUN5 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC28BQ9BUN5 AC112907.3-201ENST00000577781 2400 ntBASIC20.01■□□□□ 0.79
CCDC28BQ9BUN5 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC28BQ9BUN5 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC28BQ9BUN5 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC28BQ9BUN5 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC28BQ9BUN5 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC28BQ9BUN5 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC28BQ9BUN5 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC28BQ9BUN5 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC28BQ9BUN5 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC28BQ9BUN5 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC28BQ9BUN5 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20■□□□□ 0.79
CCDC28BQ9BUN5 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC28BQ9BUN5 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20■□□□□ 0.79
CCDC28BQ9BUN5 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC28BQ9BUN5 MIR4466-201ENST00000606121 54 ntBASIC20■□□□□ 0.79
CCDC28BQ9BUN5 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20■□□□□ 0.79
CCDC28BQ9BUN5 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20■□□□□ 0.79
CCDC28BQ9BUN5 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC28BQ9BUN5 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC28BQ9BUN5 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC28BQ9BUN5 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC28BQ9BUN5 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
CCDC28BQ9BUN5 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
CCDC28BQ9BUN5 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC28BQ9BUN5 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC28BQ9BUN5 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC28BQ9BUN5 BX842568.3-201ENST00000418104 571 ntBASIC19.99■□□□□ 0.79
CCDC28BQ9BUN5 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC28BQ9BUN5 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC28BQ9BUN5 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC28BQ9BUN5 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC28BQ9BUN5 AL035685.1-201ENST00000636663 812 ntBASIC19.99■□□□□ 0.79
CCDC28BQ9BUN5 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC28BQ9BUN5 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC28BQ9BUN5 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC28BQ9BUN5 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC28BQ9BUN5 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC28BQ9BUN5 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC28BQ9BUN5 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC28BQ9BUN5 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC28BQ9BUN5 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC28BQ9BUN5 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC28BQ9BUN5 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC28BQ9BUN5 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CCDC28BQ9BUN5 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CCDC28BQ9BUN5 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC28BQ9BUN5 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC28BQ9BUN5 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.98■□□□□ 0.79
CCDC28BQ9BUN5 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CCDC28BQ9BUN5 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.98■□□□□ 0.79
CCDC28BQ9BUN5 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms