Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
HNF4AP41235 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
HNF4AP41235 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HNF4AP41235 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
HNF4AP41235 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HNF4AP41235 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HNF4AP41235 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.96■□□□□ 0.79
HNF4AP41235 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HNF4AP41235 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HNF4AP41235 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
HNF4AP41235 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.95■□□□□ 0.78
HNF4AP41235 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HNF4AP41235 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HNF4AP41235 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.95■□□□□ 0.78
HNF4AP41235 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
HNF4AP41235 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HNF4AP41235 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
HNF4AP41235 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HNF4AP41235 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HNF4AP41235 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HNF4AP41235 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.95■□□□□ 0.78
HNF4AP41235 AC022517.1-201ENST00000592429 346 ntBASIC19.95■□□□□ 0.78
HNF4AP41235 UBE2DNL-204ENST00000602536 740 ntBASIC19.95■□□□□ 0.78
HNF4AP41235 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.95■□□□□ 0.78
HNF4AP41235 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HNF4AP41235 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.95■□□□□ 0.78
HNF4AP41235 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HNF4AP41235 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HNF4AP41235 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HNF4AP41235 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
HNF4AP41235 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HNF4AP41235 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HNF4AP41235 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
HNF4AP41235 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
HNF4AP41235 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HNF4AP41235 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HNF4AP41235 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.94■□□□□ 0.78
HNF4AP41235 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HNF4AP41235 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
HNF4AP41235 AC016769.1-201ENST00000409132 1010 ntBASIC19.94■□□□□ 0.78
HNF4AP41235 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.94■□□□□ 0.78
HNF4AP41235 SLC7A5P1-201ENST00000568957 537 ntBASIC19.94■□□□□ 0.78
HNF4AP41235 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.94■□□□□ 0.78
HNF4AP41235 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.94■□□□□ 0.78
HNF4AP41235 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.94■□□□□ 0.78
HNF4AP41235 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HNF4AP41235 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HNF4AP41235 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HNF4AP41235 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.94■□□□□ 0.78
HNF4AP41235 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
HNF4AP41235 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.94■□□□□ 0.78
HNF4AP41235 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HNF4AP41235 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
HNF4AP41235 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HNF4AP41235 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
HNF4AP41235 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HNF4AP41235 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.93■□□□□ 0.78
HNF4AP41235 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
HNF4AP41235 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HNF4AP41235 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
HNF4AP41235 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HNF4AP41235 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.93■□□□□ 0.78
HNF4AP41235 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.93■□□□□ 0.78
HNF4AP41235 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
HNF4AP41235 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.93■□□□□ 0.78
HNF4AP41235 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
HNF4AP41235 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HNF4AP41235 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HNF4AP41235 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HNF4AP41235 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HNF4AP41235 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.92■□□□□ 0.78
HNF4AP41235 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.92■□□□□ 0.78
HNF4AP41235 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HNF4AP41235 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HNF4AP41235 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HNF4AP41235 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.92■□□□□ 0.78
HNF4AP41235 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.92■□□□□ 0.78
HNF4AP41235 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
HNF4AP41235 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
HNF4AP41235 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HNF4AP41235 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HNF4AP41235 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.92■□□□□ 0.78
HNF4AP41235 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.92■□□□□ 0.78
HNF4AP41235 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HNF4AP41235 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HNF4AP41235 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.92■□□□□ 0.78
HNF4AP41235 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.92■□□□□ 0.78
HNF4AP41235 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.92■□□□□ 0.78
HNF4AP41235 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
HNF4AP41235 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
HNF4AP41235 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HNF4AP41235 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HNF4AP41235 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
HNF4AP41235 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HNF4AP41235 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
HNF4AP41235 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.91■□□□□ 0.78
HNF4AP41235 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.91■□□□□ 0.78
HNF4AP41235 IKBKGP1-201ENST00000612193 1073 ntBASIC19.91■□□□□ 0.78
HNF4AP41235 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.91■□□□□ 0.78
HNF4AP41235 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms