Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX3P41225 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SOX3P41225 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
SOX3P41225 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX3P41225 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX3P41225 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.36■□□□□ 0.69
SOX3P41225 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.36■□□□□ 0.69
SOX3P41225 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.36■□□□□ 0.69
SOX3P41225 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
SOX3P41225 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.36■□□□□ 0.69
SOX3P41225 LINC01521-201ENST00000504184 1943 ntBASIC19.36■□□□□ 0.69
SOX3P41225 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.36■□□□□ 0.69
SOX3P41225 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.36■□□□□ 0.69
SOX3P41225 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.36■□□□□ 0.69
SOX3P41225 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.36■□□□□ 0.69
SOX3P41225 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.36■□□□□ 0.69
SOX3P41225 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.36■□□□□ 0.69
SOX3P41225 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.36■□□□□ 0.69
SOX3P41225 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX3P41225 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX3P41225 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SOX3P41225 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX3P41225 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX3P41225 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
SOX3P41225 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SOX3P41225 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX3P41225 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SOX3P41225 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.36■□□□□ 0.69
SOX3P41225 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SOX3P41225 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX3P41225 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
SOX3P41225 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX3P41225 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX3P41225 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SOX3P41225 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.35■□□□□ 0.69
SOX3P41225 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.35■□□□□ 0.69
SOX3P41225 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.35■□□□□ 0.69
SOX3P41225 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX3P41225 MIR663A-201ENST00000385250 93 ntBASIC19.35■□□□□ 0.69
SOX3P41225 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
SOX3P41225 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.35■□□□□ 0.69
SOX3P41225 CROCCP5-201ENST00000436658 830 ntBASIC19.35■□□□□ 0.69
SOX3P41225 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.35■□□□□ 0.69
SOX3P41225 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.35■□□□□ 0.69
SOX3P41225 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.35■□□□□ 0.69
SOX3P41225 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.35■□□□□ 0.69
SOX3P41225 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.35■□□□□ 0.69
SOX3P41225 AC231657.2-201ENST00000624556 255 ntBASIC19.35■□□□□ 0.69
SOX3P41225 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SOX3P41225 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.35■□□□□ 0.69
SOX3P41225 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX3P41225 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.35■□□□□ 0.69
SOX3P41225 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SOX3P41225 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.35■□□□□ 0.69
SOX3P41225 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX3P41225 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX3P41225 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX3P41225 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX3P41225 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX3P41225 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX3P41225 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SOX3P41225 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
SOX3P41225 KRT16P2-201ENST00000414673 1423 ntBASIC19.34■□□□□ 0.69
SOX3P41225 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.34■□□□□ 0.69
SOX3P41225 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SOX3P41225 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SOX3P41225 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SOX3P41225 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.34■□□□□ 0.69
SOX3P41225 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SOX3P41225 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SOX3P41225 AC007322.1-201ENST00000426983 750 ntBASIC19.34■□□□□ 0.69
SOX3P41225 AC006970.2-201ENST00000450065 779 ntBASIC19.34■□□□□ 0.69
SOX3P41225 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SOX3P41225 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SOX3P41225 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SOX3P41225 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SOX3P41225 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.34■□□□□ 0.69
SOX3P41225 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.34■□□□□ 0.69
SOX3P41225 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SOX3P41225 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SOX3P41225 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
SOX3P41225 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SOX3P41225 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SOX3P41225 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
SOX3P41225 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SOX3P41225 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.33■□□□□ 0.68
SOX3P41225 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
SOX3P41225 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.33■□□□□ 0.68
SOX3P41225 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.33■□□□□ 0.68
SOX3P41225 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
SOX3P41225 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SOX3P41225 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SOX3P41225 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.33■□□□□ 0.68
SOX3P41225 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SOX3P41225 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
SOX3P41225 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SOX3P41225 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
SOX3P41225 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.32■□□□□ 0.68
SOX3P41225 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.32■□□□□ 0.68
SOX3P41225 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms