Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.03■□□□□ 0.96
TRIM56Q9BRZ2 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM56Q9BRZ2 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM56Q9BRZ2 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM56Q9BRZ2 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
TRIM56Q9BRZ2 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.03■□□□□ 0.96
TRIM56Q9BRZ2 AC105265.2-201ENST00000467189 838 ntBASIC21.03■□□□□ 0.96
TRIM56Q9BRZ2 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM56Q9BRZ2 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
TRIM56Q9BRZ2 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
TRIM56Q9BRZ2 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM56Q9BRZ2 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM56Q9BRZ2 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
TRIM56Q9BRZ2 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM56Q9BRZ2 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.02■□□□□ 0.96
TRIM56Q9BRZ2 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM56Q9BRZ2 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
TRIM56Q9BRZ2 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM56Q9BRZ2 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM56Q9BRZ2 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.02■□□□□ 0.96
TRIM56Q9BRZ2 ZNRF2P3-201ENST00000424200 374 ntBASIC21.02■□□□□ 0.96
TRIM56Q9BRZ2 AL354811.1-201ENST00000610286 706 ntBASIC21.02■□□□□ 0.96
TRIM56Q9BRZ2 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.02■□□□□ 0.96
TRIM56Q9BRZ2 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM56Q9BRZ2 PCDHAC2-203ENST00000615316 3011 ntBASIC21.02■□□□□ 0.96
TRIM56Q9BRZ2 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.02■□□□□ 0.96
TRIM56Q9BRZ2 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM56Q9BRZ2 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
TRIM56Q9BRZ2 AC121338.2-201ENST00000622535 1744 ntBASIC21.01■□□□□ 0.95
TRIM56Q9BRZ2 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM56Q9BRZ2 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.01■□□□□ 0.95
TRIM56Q9BRZ2 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM56Q9BRZ2 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM56Q9BRZ2 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM56Q9BRZ2 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM56Q9BRZ2 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM56Q9BRZ2 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM56Q9BRZ2 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM56Q9BRZ2 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM56Q9BRZ2 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM56Q9BRZ2 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
TRIM56Q9BRZ2 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
TRIM56Q9BRZ2 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 AC053503.5-201ENST00000601508 636 ntBASIC21■□□□□ 0.95
TRIM56Q9BRZ2 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRIM56Q9BRZ2 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 AP005212.1-201ENST00000581547 1997 ntBASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM56Q9BRZ2 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM56Q9BRZ2 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM56Q9BRZ2 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM56Q9BRZ2 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
TRIM56Q9BRZ2 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms