Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC18.63■□□□□ 0.57
LSM3P62310 PVT1-219ENST00000523427 938 ntTSL 3 BASIC18.63■□□□□ 0.57
LSM3P62310 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC18.63■□□□□ 0.57
LSM3P62310 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC18.63■□□□□ 0.57
LSM3P62310 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LSM3P62310 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LSM3P62310 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LSM3P62310 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LSM3P62310 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LSM3P62310 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.63■□□□□ 0.57
LSM3P62310 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LSM3P62310 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.62■□□□□ 0.57
LSM3P62310 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LSM3P62310 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.62■□□□□ 0.57
LSM3P62310 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LSM3P62310 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LSM3P62310 AIRN-201ENST00000601203 4374 ntBASIC18.62■□□□□ 0.57
LSM3P62310 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LSM3P62310 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
LSM3P62310 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LSM3P62310 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LSM3P62310 TK2-202ENST00000417693 1046 ntTSL 2 BASIC18.62■□□□□ 0.57
LSM3P62310 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC18.62■□□□□ 0.57
LSM3P62310 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LSM3P62310 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LSM3P62310 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.62■□□□□ 0.57
LSM3P62310 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LSM3P62310 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LSM3P62310 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
LSM3P62310 TNXA-203ENST00000507684 2038 ntBASIC18.62■□□□□ 0.57
LSM3P62310 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LSM3P62310 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LSM3P62310 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
LSM3P62310 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
LSM3P62310 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LSM3P62310 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LSM3P62310 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LSM3P62310 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM3P62310 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LSM3P62310 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.61■□□□□ 0.57
LSM3P62310 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.61■□□□□ 0.57
LSM3P62310 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM3P62310 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
LSM3P62310 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
LSM3P62310 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM3P62310 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
LSM3P62310 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LSM3P62310 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM3P62310 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM3P62310 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LSM3P62310 AL031602.1-201ENST00000633169 911 ntBASIC18.61■□□□□ 0.57
LSM3P62310 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.61■□□□□ 0.57
LSM3P62310 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM3P62310 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
LSM3P62310 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM3P62310 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM3P62310 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.6■□□□□ 0.57
LSM3P62310 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
LSM3P62310 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LSM3P62310 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.6■□□□□ 0.57
LSM3P62310 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LSM3P62310 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.6■□□□□ 0.57
LSM3P62310 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LSM3P62310 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LSM3P62310 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LSM3P62310 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LSM3P62310 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LSM3P62310 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
LSM3P62310 DUX4L18-201ENST00000553347 1267 ntBASIC18.6■□□□□ 0.57
LSM3P62310 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.6■□□□□ 0.57
LSM3P62310 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.6■□□□□ 0.57
LSM3P62310 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LSM3P62310 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.6■□□□□ 0.57
LSM3P62310 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LSM3P62310 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.6■□□□□ 0.57
LSM3P62310 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
LSM3P62310 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM3P62310 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM3P62310 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM3P62310 AL158211.5-201ENST00000623583 2518 ntBASIC18.59■□□□□ 0.57
LSM3P62310 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM3P62310 IDNK-201ENST00000376417 511 ntTSL 5 BASIC18.59■□□□□ 0.57
LSM3P62310 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM3P62310 U85056.1-201ENST00000616429 682 ntBASIC18.59■□□□□ 0.57
LSM3P62310 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.59■□□□□ 0.57
LSM3P62310 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM3P62310 AC009102.2-201ENST00000606772 1639 ntBASIC18.59■□□□□ 0.57
LSM3P62310 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM3P62310 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM3P62310 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM3P62310 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.59■□□□□ 0.57
LSM3P62310 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
LSM3P62310 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
LSM3P62310 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.58■□□□□ 0.57
LSM3P62310 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LSM3P62310 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
LSM3P62310 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LSM3P62310 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LSM3P62310 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LSM3P62310 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms