Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SOX3P41225 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SOX3P41225 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.41■□□□□ 0.7
SOX3P41225 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.41■□□□□ 0.7
SOX3P41225 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.41■□□□□ 0.7
SOX3P41225 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX3P41225 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX3P41225 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX3P41225 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX3P41225 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.41■□□□□ 0.7
SOX3P41225 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SOX3P41225 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.41■□□□□ 0.7
SOX3P41225 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.41■□□□□ 0.7
SOX3P41225 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SOX3P41225 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.4■□□□□ 0.7
SOX3P41225 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
SOX3P41225 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SOX3P41225 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SOX3P41225 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SOX3P41225 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
SOX3P41225 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SOX3P41225 POU5F1P4-201ENST00000413175 1085 ntBASIC19.4■□□□□ 0.7
SOX3P41225 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SOX3P41225 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.4■□□□□ 0.7
SOX3P41225 AC120498.10-201ENST00000621827 505 ntBASIC19.4■□□□□ 0.7
SOX3P41225 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SOX3P41225 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SOX3P41225 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SOX3P41225 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
SOX3P41225 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SOX3P41225 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SOX3P41225 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SOX3P41225 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.39■□□□□ 0.7
SOX3P41225 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.39■□□□□ 0.7
SOX3P41225 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
SOX3P41225 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
SOX3P41225 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.7
SOX3P41225 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.39■□□□□ 0.69
SOX3P41225 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SOX3P41225 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SOX3P41225 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SOX3P41225 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SOX3P41225 DUX4L16-201ENST00000555130 1264 ntBASIC19.39■□□□□ 0.69
SOX3P41225 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SOX3P41225 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
SOX3P41225 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.39■□□□□ 0.69
SOX3P41225 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SOX3P41225 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SOX3P41225 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.39■□□□□ 0.69
SOX3P41225 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.39■□□□□ 0.69
SOX3P41225 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SOX3P41225 AC061975.6-201ENST00000579045 1553 ntBASIC19.39■□□□□ 0.69
SOX3P41225 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.39■□□□□ 0.69
SOX3P41225 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SOX3P41225 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SOX3P41225 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SOX3P41225 FEM1AP4-201ENST00000443167 1987 ntBASIC19.39■□□□□ 0.69
SOX3P41225 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
SOX3P41225 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SOX3P41225 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SOX3P41225 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
SOX3P41225 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SOX3P41225 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SOX3P41225 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SOX3P41225 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SOX3P41225 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SOX3P41225 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SOX3P41225 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SOX3P41225 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.38■□□□□ 0.69
SOX3P41225 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.38■□□□□ 0.69
SOX3P41225 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.38■□□□□ 0.69
SOX3P41225 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SOX3P41225 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.38■□□□□ 0.69
SOX3P41225 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SOX3P41225 AC010536.3-201ENST00000620306 533 ntBASIC19.38■□□□□ 0.69
SOX3P41225 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SOX3P41225 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SOX3P41225 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX3P41225 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
SOX3P41225 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX3P41225 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.37■□□□□ 0.69
SOX3P41225 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX3P41225 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.37■□□□□ 0.69
SOX3P41225 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.37■□□□□ 0.69
SOX3P41225 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SOX3P41225 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SOX3P41225 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.37■□□□□ 0.69
SOX3P41225 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.37■□□□□ 0.69
SOX3P41225 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SOX3P41225 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.37■□□□□ 0.69
SOX3P41225 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.37■□□□□ 0.69
SOX3P41225 SLC7A5P1-201ENST00000568957 537 ntBASIC19.37■□□□□ 0.69
SOX3P41225 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.37■□□□□ 0.69
SOX3P41225 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.37■□□□□ 0.69
SOX3P41225 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.37■□□□□ 0.69
SOX3P41225 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SOX3P41225 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.37■□□□□ 0.69
SOX3P41225 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SOX3P41225 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SOX3P41225 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms