Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SDC1P18827 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SDC1P18827 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SDC1P18827 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SDC1P18827 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.7■□□□□ 0.74
SDC1P18827 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.7■□□□□ 0.74
SDC1P18827 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SDC1P18827 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.7■□□□□ 0.74
SDC1P18827 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
SDC1P18827 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SDC1P18827 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
SDC1P18827 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SDC1P18827 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SDC1P18827 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SDC1P18827 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SDC1P18827 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.69■□□□□ 0.74
SDC1P18827 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
SDC1P18827 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
SDC1P18827 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.69■□□□□ 0.74
SDC1P18827 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.69■□□□□ 0.74
SDC1P18827 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.69■□□□□ 0.74
SDC1P18827 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
SDC1P18827 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.69■□□□□ 0.74
SDC1P18827 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SDC1P18827 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SDC1P18827 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.69■□□□□ 0.74
SDC1P18827 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SDC1P18827 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SDC1P18827 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
SDC1P18827 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SDC1P18827 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SDC1P18827 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SDC1P18827 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.68■□□□□ 0.74
SDC1P18827 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SDC1P18827 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SDC1P18827 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SDC1P18827 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.68■□□□□ 0.74
SDC1P18827 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SDC1P18827 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.68■□□□□ 0.74
SDC1P18827 AC104187.1-201ENST00000607510 612 ntBASIC19.68■□□□□ 0.74
SDC1P18827 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SDC1P18827 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SDC1P18827 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.67■□□□□ 0.74
SDC1P18827 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.67■□□□□ 0.74
SDC1P18827 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 AC245052.3-201ENST00000450182 901 ntBASIC19.67■□□□□ 0.74
SDC1P18827 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.67■□□□□ 0.74
SDC1P18827 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.67■□□□□ 0.74
SDC1P18827 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
SDC1P18827 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.67■□□□□ 0.74
SDC1P18827 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC1P18827 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.66■□□□□ 0.74
SDC1P18827 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SDC1P18827 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.66■□□□□ 0.74
SDC1P18827 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SDC1P18827 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SDC1P18827 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.66■□□□□ 0.74
SDC1P18827 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.66■□□□□ 0.74
SDC1P18827 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SDC1P18827 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SDC1P18827 AC123595.1-201ENST00000440769 1046 ntBASIC19.66■□□□□ 0.74
SDC1P18827 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.66■□□□□ 0.74
SDC1P18827 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.66■□□□□ 0.74
SDC1P18827 DUX4L2-201ENST00000561772 1275 ntBASIC19.66■□□□□ 0.74
SDC1P18827 TERF1P2-201ENST00000583350 1212 ntBASIC19.66■□□□□ 0.74
SDC1P18827 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.66■□□□□ 0.74
SDC1P18827 DUX4L6-201ENST00000626483 1275 ntBASIC19.66■□□□□ 0.74
SDC1P18827 DUX4L1-201ENST00000627662 1275 ntBASIC19.66■□□□□ 0.74
SDC1P18827 DUX4L8-201ENST00000629013 1275 ntBASIC19.66■□□□□ 0.74
SDC1P18827 DUX4L3-201ENST00000630187 1275 ntBASIC19.66■□□□□ 0.74
SDC1P18827 DUX4L7-201ENST00000630678 1275 ntBASIC19.66■□□□□ 0.74
SDC1P18827 DUX4L5-201ENST00000630834 1275 ntBASIC19.66■□□□□ 0.74
SDC1P18827 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SDC1P18827 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SDC1P18827 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
SDC1P18827 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SDC1P18827 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SDC1P18827 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.66■□□□□ 0.74
SDC1P18827 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SDC1P18827 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.65■□□□□ 0.74
SDC1P18827 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms