Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC21.58■■□□□ 1.05
HMGA1P17096 AC244015.2-201ENST00000616358 1861 ntBASIC21.58■■□□□ 1.05
HMGA1P17096 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGA1P17096 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
HMGA1P17096 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC21.58■■□□□ 1.05
HMGA1P17096 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGA1P17096 KRT18P29-201ENST00000397031 1267 ntBASIC21.58■■□□□ 1.05
HMGA1P17096 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
HMGA1P17096 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
HMGA1P17096 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.58■■□□□ 1.05
HMGA1P17096 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
HMGA1P17096 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.58■■□□□ 1.05
HMGA1P17096 AC066615.1-201ENST00000640911 628 ntBASIC21.58■■□□□ 1.05
HMGA1P17096 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.58■■□□□ 1.05
HMGA1P17096 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC21.58■■□□□ 1.04
HMGA1P17096 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
HMGA1P17096 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.04
HMGA1P17096 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGA1P17096 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGA1P17096 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.57■■□□□ 1.04
HMGA1P17096 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.57■■□□□ 1.04
HMGA1P17096 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HMGA1P17096 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGA1P17096 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.57■■□□□ 1.04
HMGA1P17096 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.57■■□□□ 1.04
HMGA1P17096 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.57■■□□□ 1.04
HMGA1P17096 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.57■■□□□ 1.04
HMGA1P17096 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGA1P17096 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGA1P17096 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.57■■□□□ 1.04
HMGA1P17096 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGA1P17096 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGA1P17096 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
HMGA1P17096 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGA1P17096 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGA1P17096 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
HMGA1P17096 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HMGA1P17096 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HMGA1P17096 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGA1P17096 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.56■■□□□ 1.04
HMGA1P17096 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.56■■□□□ 1.04
HMGA1P17096 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
HMGA1P17096 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HMGA1P17096 AC105020.6-201ENST00000621523 1217 ntBASIC21.56■■□□□ 1.04
HMGA1P17096 HLA-B-256ENST00000639848 1089 ntBASIC21.56■■□□□ 1.04
HMGA1P17096 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
HMGA1P17096 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGA1P17096 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGA1P17096 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGA1P17096 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
HMGA1P17096 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HMGA1P17096 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGA1P17096 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.55■■□□□ 1.04
HMGA1P17096 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGA1P17096 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.55■■□□□ 1.04
HMGA1P17096 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGA1P17096 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HMGA1P17096 AC060766.5-201ENST00000590539 871 ntBASIC21.55■■□□□ 1.04
HMGA1P17096 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGA1P17096 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGA1P17096 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGA1P17096 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.55■■□□□ 1.04
HMGA1P17096 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGA1P17096 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGA1P17096 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGA1P17096 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HMGA1P17096 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HMGA1P17096 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGA1P17096 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.55■■□□□ 1.04
HMGA1P17096 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.55■■□□□ 1.04
HMGA1P17096 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.54■■□□□ 1.04
HMGA1P17096 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGA1P17096 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
HMGA1P17096 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
HMGA1P17096 AC026366.1-201ENST00000488803 879 ntBASIC21.54■■□□□ 1.04
HMGA1P17096 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.54■■□□□ 1.04
HMGA1P17096 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGA1P17096 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HMGA1P17096 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HMGA1P17096 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC21.54■■□□□ 1.04
HMGA1P17096 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGA1P17096 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC21.54■■□□□ 1.04
HMGA1P17096 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGA1P17096 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.53■■□□□ 1.04
HMGA1P17096 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HMGA1P17096 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.53■■□□□ 1.04
HMGA1P17096 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGA1P17096 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGA1P17096 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.53■■□□□ 1.04
HMGA1P17096 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.53■■□□□ 1.04
HMGA1P17096 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGA1P17096 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HMGA1P17096 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
HMGA1P17096 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGA1P17096 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.53■■□□□ 1.04
HMGA1P17096 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HMGA1P17096 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGA1P17096 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
HMGA1P17096 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGA1P17096 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms