Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 DUX4L3-201ENST00000630187 1275 ntBASIC19.25■□□□□ 0.67
HMGN4O00479 DUX4L7-201ENST00000630678 1275 ntBASIC19.25■□□□□ 0.67
HMGN4O00479 DUX4L5-201ENST00000630834 1275 ntBASIC19.25■□□□□ 0.67
HMGN4O00479 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGN4O00479 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
HMGN4O00479 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.25■□□□□ 0.67
HMGN4O00479 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGN4O00479 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGN4O00479 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGN4O00479 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGN4O00479 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGN4O00479 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGN4O00479 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGN4O00479 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGN4O00479 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
HMGN4O00479 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGN4O00479 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGN4O00479 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HMGN4O00479 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HMGN4O00479 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HMGN4O00479 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGN4O00479 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
HMGN4O00479 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGN4O00479 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGN4O00479 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.24■□□□□ 0.67
HMGN4O00479 AC120498.10-201ENST00000621827 505 ntBASIC19.24■□□□□ 0.67
HMGN4O00479 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGN4O00479 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HMGN4O00479 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGN4O00479 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGN4O00479 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
HMGN4O00479 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGN4O00479 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGN4O00479 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HMGN4O00479 AC020907.5-201ENST00000624372 1936 ntBASIC19.23■□□□□ 0.67
HMGN4O00479 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGN4O00479 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
HMGN4O00479 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.23■□□□□ 0.67
HMGN4O00479 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HMGN4O00479 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGN4O00479 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.23■□□□□ 0.67
HMGN4O00479 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
HMGN4O00479 AC245052.3-201ENST00000450182 901 ntBASIC19.23■□□□□ 0.67
HMGN4O00479 SLC7A5P2-201ENST00000553010 536 ntBASIC19.23■□□□□ 0.67
HMGN4O00479 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.23■□□□□ 0.67
HMGN4O00479 CCDC92B-201ENST00000575506 885 ntBASIC19.23■□□□□ 0.67
HMGN4O00479 AP001160.3-201ENST00000601484 763 ntBASIC19.23■□□□□ 0.67
HMGN4O00479 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HMGN4O00479 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGN4O00479 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGN4O00479 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGN4O00479 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
HMGN4O00479 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
HMGN4O00479 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.22■□□□□ 0.67
HMGN4O00479 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGN4O00479 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGN4O00479 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.22■□□□□ 0.67
HMGN4O00479 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGN4O00479 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.22■□□□□ 0.67
HMGN4O00479 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.22■□□□□ 0.67
HMGN4O00479 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.22■□□□□ 0.67
HMGN4O00479 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HMGN4O00479 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HMGN4O00479 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
HMGN4O00479 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HMGN4O00479 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.22■□□□□ 0.67
HMGN4O00479 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGN4O00479 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGN4O00479 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.21■□□□□ 0.67
HMGN4O00479 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
HMGN4O00479 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.21■□□□□ 0.67
HMGN4O00479 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGN4O00479 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
HMGN4O00479 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGN4O00479 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
HMGN4O00479 ZNRF2P3-201ENST00000424200 374 ntBASIC19.21■□□□□ 0.67
HMGN4O00479 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.21■□□□□ 0.67
HMGN4O00479 KRT18P14-201ENST00000534205 1250 ntBASIC19.21■□□□□ 0.67
HMGN4O00479 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGN4O00479 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
HMGN4O00479 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.21■□□□□ 0.67
HMGN4O00479 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
HMGN4O00479 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.21■□□□□ 0.67
HMGN4O00479 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGN4O00479 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HMGN4O00479 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGN4O00479 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.21■□□□□ 0.67
HMGN4O00479 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGN4O00479 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGN4O00479 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGN4O00479 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HMGN4O00479 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.2■□□□□ 0.66
HMGN4O00479 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGN4O00479 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGN4O00479 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGN4O00479 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGN4O00479 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.2■□□□□ 0.66
HMGN4O00479 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.2■□□□□ 0.66
HMGN4O00479 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HMGN4O00479 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms