Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USH1CQ9Y6N9 MIR6724-1-201ENST00000616420 92 ntBASIC20.6■□□□□ 0.89
USH1CQ9Y6N9 MIR6724-2-201ENST00000616483 92 ntBASIC20.6■□□□□ 0.89
USH1CQ9Y6N9 MIR6724-4-201ENST00000617390 92 ntBASIC20.6■□□□□ 0.89
USH1CQ9Y6N9 MIR6724-3-201ENST00000622482 92 ntBASIC20.6■□□□□ 0.89
USH1CQ9Y6N9 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
USH1CQ9Y6N9 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.6■□□□□ 0.89
USH1CQ9Y6N9 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
USH1CQ9Y6N9 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.6■□□□□ 0.89
USH1CQ9Y6N9 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
USH1CQ9Y6N9 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USH1CQ9Y6N9 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USH1CQ9Y6N9 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.59■□□□□ 0.89
USH1CQ9Y6N9 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USH1CQ9Y6N9 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
USH1CQ9Y6N9 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
USH1CQ9Y6N9 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.59■□□□□ 0.89
USH1CQ9Y6N9 AP004607.7-201ENST00000527152 1677 ntBASIC20.59■□□□□ 0.89
USH1CQ9Y6N9 AC099791.2-201ENST00000605725 427 ntBASIC20.59■□□□□ 0.89
USH1CQ9Y6N9 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USH1CQ9Y6N9 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
USH1CQ9Y6N9 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USH1CQ9Y6N9 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USH1CQ9Y6N9 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USH1CQ9Y6N9 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.58■□□□□ 0.89
USH1CQ9Y6N9 AC112907.3-201ENST00000577781 2400 ntBASIC20.58■□□□□ 0.89
USH1CQ9Y6N9 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USH1CQ9Y6N9 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.89
USH1CQ9Y6N9 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
USH1CQ9Y6N9 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USH1CQ9Y6N9 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
USH1CQ9Y6N9 MIR3181-201ENST00000578512 73 ntBASIC20.58■□□□□ 0.89
USH1CQ9Y6N9 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
USH1CQ9Y6N9 AL162377.1-201ENST00000618844 1793 ntBASIC20.58■□□□□ 0.89
USH1CQ9Y6N9 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.88
USH1CQ9Y6N9 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
USH1CQ9Y6N9 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
USH1CQ9Y6N9 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.58■□□□□ 0.88
USH1CQ9Y6N9 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.58■□□□□ 0.88
USH1CQ9Y6N9 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USH1CQ9Y6N9 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USH1CQ9Y6N9 AC007225.1-201ENST00000566331 1836 ntBASIC20.57■□□□□ 0.88
USH1CQ9Y6N9 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USH1CQ9Y6N9 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
USH1CQ9Y6N9 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.57■□□□□ 0.88
USH1CQ9Y6N9 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USH1CQ9Y6N9 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.57■□□□□ 0.88
USH1CQ9Y6N9 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USH1CQ9Y6N9 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USH1CQ9Y6N9 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USH1CQ9Y6N9 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USH1CQ9Y6N9 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USH1CQ9Y6N9 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USH1CQ9Y6N9 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USH1CQ9Y6N9 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
USH1CQ9Y6N9 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
USH1CQ9Y6N9 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
USH1CQ9Y6N9 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.56■□□□□ 0.88
USH1CQ9Y6N9 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC20.56■□□□□ 0.88
USH1CQ9Y6N9 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USH1CQ9Y6N9 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
USH1CQ9Y6N9 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.56■□□□□ 0.88
USH1CQ9Y6N9 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USH1CQ9Y6N9 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USH1CQ9Y6N9 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USH1CQ9Y6N9 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USH1CQ9Y6N9 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
USH1CQ9Y6N9 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USH1CQ9Y6N9 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USH1CQ9Y6N9 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.56■□□□□ 0.88
USH1CQ9Y6N9 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.56■□□□□ 0.88
USH1CQ9Y6N9 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.56■□□□□ 0.88
USH1CQ9Y6N9 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USH1CQ9Y6N9 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 BX323043.1-201ENST00000641006 1765 ntBASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 AC010525.1-201ENST00000585559 441 ntBASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 AC121338.2-201ENST00000622535 1744 ntBASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 AC018445.3-201ENST00000624177 1945 ntBASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.55■□□□□ 0.88
USH1CQ9Y6N9 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USH1CQ9Y6N9 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USH1CQ9Y6N9 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USH1CQ9Y6N9 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms