Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHANK1Q9Y566 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHANK1Q9Y566 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHANK1Q9Y566 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.82■□□□□ 0.6
SHANK1Q9Y566 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
SHANK1Q9Y566 AC010331.1-201ENST00000611423 582 ntBASIC18.82■□□□□ 0.6
SHANK1Q9Y566 AC100791.3-201ENST00000617619 330 ntBASIC18.82■□□□□ 0.6
SHANK1Q9Y566 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 AC091799.1-201ENST00000422823 811 ntBASIC18.81■□□□□ 0.6
SHANK1Q9Y566 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC18.81■□□□□ 0.6
SHANK1Q9Y566 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC18.8■□□□□ 0.6
SHANK1Q9Y566 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC18.8■□□□□ 0.6
SHANK1Q9Y566 POM121L13P-201ENST00000422362 380 ntBASIC18.8■□□□□ 0.6
SHANK1Q9Y566 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
SHANK1Q9Y566 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK1Q9Y566 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK1Q9Y566 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK1Q9Y566 BX088651.1-201ENST00000540551 451 ntBASIC18.8■□□□□ 0.6
SHANK1Q9Y566 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.8■□□□□ 0.6
SHANK1Q9Y566 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.8■□□□□ 0.6
SHANK1Q9Y566 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK1Q9Y566 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK1Q9Y566 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
SHANK1Q9Y566 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHANK1Q9Y566 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 HLA-B-256ENST00000639848 1089 ntBASIC18.79■□□□□ 0.6
SHANK1Q9Y566 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC18.79■□□□□ 0.6
SHANK1Q9Y566 AC137767.1-201ENST00000602918 1920 ntBASIC18.78■□□□□ 0.6
SHANK1Q9Y566 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHANK1Q9Y566 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHANK1Q9Y566 AC092368.3-202ENST00000574180 1591 ntBASIC18.77■□□□□ 0.6
SHANK1Q9Y566 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
SHANK1Q9Y566 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SHANK1Q9Y566 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHANK1Q9Y566 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHANK1Q9Y566 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.77■□□□□ 0.6
SHANK1Q9Y566 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SHANK1Q9Y566 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.77■□□□□ 0.6
SHANK1Q9Y566 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms