Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
NKX2-3Q8TAU0 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
NKX2-3Q8TAU0 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
NKX2-3Q8TAU0 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
NKX2-3Q8TAU0 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
NKX2-3Q8TAU0 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC24.66■■□□□ 1.54
NKX2-3Q8TAU0 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC24.66■■□□□ 1.54
NKX2-3Q8TAU0 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
NKX2-3Q8TAU0 KRT16P2-201ENST00000414673 1423 ntBASIC24.66■■□□□ 1.54
NKX2-3Q8TAU0 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
NKX2-3Q8TAU0 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC24.66■■□□□ 1.54
NKX2-3Q8TAU0 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC24.66■■□□□ 1.54
NKX2-3Q8TAU0 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC24.65■■□□□ 1.54
NKX2-3Q8TAU0 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC24.65■■□□□ 1.54
NKX2-3Q8TAU0 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NKX2-3Q8TAU0 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NKX2-3Q8TAU0 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
NKX2-3Q8TAU0 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC24.65■■□□□ 1.54
NKX2-3Q8TAU0 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NKX2-3Q8TAU0 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NKX2-3Q8TAU0 RNA5SP413-201ENST00000516373 109 ntBASIC24.65■■□□□ 1.54
NKX2-3Q8TAU0 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NKX2-3Q8TAU0 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC24.65■■□□□ 1.54
NKX2-3Q8TAU0 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NKX2-3Q8TAU0 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NKX2-3Q8TAU0 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC24.65■■□□□ 1.54
NKX2-3Q8TAU0 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NKX2-3Q8TAU0 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC24.65■■□□□ 1.54
NKX2-3Q8TAU0 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC24.65■■□□□ 1.54
NKX2-3Q8TAU0 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NKX2-3Q8TAU0 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC24.64■■□□□ 1.54
NKX2-3Q8TAU0 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC24.64■■□□□ 1.54
NKX2-3Q8TAU0 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC24.64■■□□□ 1.54
NKX2-3Q8TAU0 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.54
NKX2-3Q8TAU0 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.54
NKX2-3Q8TAU0 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
NKX2-3Q8TAU0 RPS2P52-201ENST00000469610 820 ntBASIC24.64■■□□□ 1.54
NKX2-3Q8TAU0 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC24.64■■□□□ 1.54
NKX2-3Q8TAU0 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC24.64■■□□□ 1.53
NKX2-3Q8TAU0 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
NKX2-3Q8TAU0 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC24.64■■□□□ 1.53
NKX2-3Q8TAU0 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
NKX2-3Q8TAU0 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
NKX2-3Q8TAU0 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
NKX2-3Q8TAU0 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
NKX2-3Q8TAU0 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NKX2-3Q8TAU0 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC24.63■■□□□ 1.53
NKX2-3Q8TAU0 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
NKX2-3Q8TAU0 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NKX2-3Q8TAU0 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC24.63■■□□□ 1.53
NKX2-3Q8TAU0 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC24.63■■□□□ 1.53
NKX2-3Q8TAU0 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC24.63■■□□□ 1.53
NKX2-3Q8TAU0 IRX5-204ENST00000560154 879 ntTSL 5 BASIC24.63■■□□□ 1.53
NKX2-3Q8TAU0 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
NKX2-3Q8TAU0 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NKX2-3Q8TAU0 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC24.63■■□□□ 1.53
NKX2-3Q8TAU0 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NKX2-3Q8TAU0 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
NKX2-3Q8TAU0 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NKX2-3Q8TAU0 CLDN5-201ENST00000403084 2357 ntBASIC24.62■■□□□ 1.53
NKX2-3Q8TAU0 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
NKX2-3Q8TAU0 TERF1P5-201ENST00000477545 1207 ntBASIC24.62■■□□□ 1.53
NKX2-3Q8TAU0 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC24.62■■□□□ 1.53
NKX2-3Q8TAU0 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
NKX2-3Q8TAU0 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
NKX2-3Q8TAU0 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC24.61■■□□□ 1.53
NKX2-3Q8TAU0 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC24.61■■□□□ 1.53
NKX2-3Q8TAU0 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC24.61■■□□□ 1.53
NKX2-3Q8TAU0 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
NKX2-3Q8TAU0 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC24.61■■□□□ 1.53
NKX2-3Q8TAU0 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC24.61■■□□□ 1.53
NKX2-3Q8TAU0 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC24.61■■□□□ 1.53
NKX2-3Q8TAU0 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC24.61■■□□□ 1.53
NKX2-3Q8TAU0 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
NKX2-3Q8TAU0 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC24.61■■□□□ 1.53
NKX2-3Q8TAU0 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
NKX2-3Q8TAU0 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
NKX2-3Q8TAU0 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
NKX2-3Q8TAU0 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
NKX2-3Q8TAU0 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
NKX2-3Q8TAU0 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
NKX2-3Q8TAU0 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
NKX2-3Q8TAU0 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC24.6■■□□□ 1.53
NKX2-3Q8TAU0 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
NKX2-3Q8TAU0 AC091799.1-201ENST00000422823 811 ntBASIC24.6■■□□□ 1.53
NKX2-3Q8TAU0 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC24.6■■□□□ 1.53
NKX2-3Q8TAU0 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC24.6■■□□□ 1.53
NKX2-3Q8TAU0 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC24.6■■□□□ 1.53
NKX2-3Q8TAU0 AC098934.4-201ENST00000564127 592 ntBASIC24.6■■□□□ 1.53
NKX2-3Q8TAU0 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC24.6■■□□□ 1.53
NKX2-3Q8TAU0 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
NKX2-3Q8TAU0 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC24.59■■□□□ 1.53
NKX2-3Q8TAU0 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
NKX2-3Q8TAU0 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
NKX2-3Q8TAU0 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
NKX2-3Q8TAU0 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NKX2-3Q8TAU0 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC24.59■■□□□ 1.53
NKX2-3Q8TAU0 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NKX2-3Q8TAU0 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NKX2-3Q8TAU0 AC068338.2-201ENST00000563278 1430 ntBASIC24.59■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms