Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
H3F3AP84243 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.56■□□□□ 0.56
H3F3AP84243 AL137060.1-201ENST00000618151 2648 ntBASIC18.56■□□□□ 0.56
H3F3AP84243 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
H3F3AP84243 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
H3F3AP84243 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
H3F3AP84243 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.56■□□□□ 0.56
H3F3AP84243 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
H3F3AP84243 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.55■□□□□ 0.56
H3F3AP84243 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
H3F3AP84243 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.55■□□□□ 0.56
H3F3AP84243 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
H3F3AP84243 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
H3F3AP84243 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.55■□□□□ 0.56
H3F3AP84243 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
H3F3AP84243 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.55■□□□□ 0.56
H3F3AP84243 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
H3F3AP84243 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.55■□□□□ 0.56
H3F3AP84243 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
H3F3AP84243 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
H3F3AP84243 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
H3F3AP84243 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
H3F3AP84243 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
H3F3AP84243 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.55■□□□□ 0.56
H3F3AP84243 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
H3F3AP84243 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
H3F3AP84243 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.54■□□□□ 0.56
H3F3AP84243 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.54■□□□□ 0.56
H3F3AP84243 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.54■□□□□ 0.56
H3F3AP84243 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
H3F3AP84243 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
H3F3AP84243 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.54■□□□□ 0.56
H3F3AP84243 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.54■□□□□ 0.56
H3F3AP84243 AC007322.4-201ENST00000509611 723 ntBASIC18.54■□□□□ 0.56
H3F3AP84243 AC013268.1-206ENST00000638368 961 ntBASIC18.54■□□□□ 0.56
H3F3AP84243 AC112229.1-201ENST00000639295 961 ntBASIC18.54■□□□□ 0.56
H3F3AP84243 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
H3F3AP84243 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
H3F3AP84243 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
H3F3AP84243 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
H3F3AP84243 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.54■□□□□ 0.56
H3F3AP84243 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
H3F3AP84243 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
H3F3AP84243 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
H3F3AP84243 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
H3F3AP84243 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
H3F3AP84243 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.53■□□□□ 0.56
H3F3AP84243 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.53■□□□□ 0.56
H3F3AP84243 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
H3F3AP84243 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.53■□□□□ 0.56
H3F3AP84243 CNN2P6-201ENST00000439038 900 ntBASIC18.53■□□□□ 0.56
H3F3AP84243 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
H3F3AP84243 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.53■□□□□ 0.56
H3F3AP84243 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
H3F3AP84243 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.53■□□□□ 0.56
H3F3AP84243 AC092666.2-201ENST00000613287 246 ntBASIC18.53■□□□□ 0.56
H3F3AP84243 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
H3F3AP84243 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
H3F3AP84243 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
H3F3AP84243 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.53■□□□□ 0.56
H3F3AP84243 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.53■□□□□ 0.56
H3F3AP84243 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.53■□□□□ 0.56
H3F3AP84243 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
H3F3AP84243 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
H3F3AP84243 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
H3F3AP84243 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
H3F3AP84243 AC004911.1-201ENST00000416316 871 ntBASIC18.52■□□□□ 0.56
H3F3AP84243 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
H3F3AP84243 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
H3F3AP84243 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.52■□□□□ 0.56
H3F3AP84243 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.52■□□□□ 0.56
H3F3AP84243 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.52■□□□□ 0.56
H3F3AP84243 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.52■□□□□ 0.56
H3F3AP84243 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
H3F3AP84243 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
H3F3AP84243 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
H3F3AP84243 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
H3F3AP84243 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
H3F3AP84243 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.51■□□□□ 0.55
H3F3AP84243 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
H3F3AP84243 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
H3F3AP84243 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.51■□□□□ 0.55
H3F3AP84243 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
H3F3AP84243 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
H3F3AP84243 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
H3F3AP84243 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
H3F3AP84243 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.51■□□□□ 0.55
H3F3AP84243 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.51■□□□□ 0.55
H3F3AP84243 AL162412.1-201ENST00000567129 965 ntBASIC18.51■□□□□ 0.55
H3F3AP84243 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.51■□□□□ 0.55
H3F3AP84243 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
H3F3AP84243 AC080038.1-201ENST00000611274 1154 ntBASIC18.51■□□□□ 0.55
H3F3AP84243 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
H3F3AP84243 AC011484.1-201ENST00000377652 1995 ntBASIC18.51■□□□□ 0.55
H3F3AP84243 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.51■□□□□ 0.55
H3F3AP84243 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
H3F3AP84243 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.51■□□□□ 0.55
H3F3AP84243 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
H3F3AP84243 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
H3F3AP84243 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms