Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
FOXA1P55317 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
FOXA1P55317 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
FOXA1P55317 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
FOXA1P55317 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.08■□□□□ 0.81
FOXA1P55317 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.08■□□□□ 0.81
FOXA1P55317 AL139246.5-201ENST00000606645 996 ntBASIC20.08■□□□□ 0.81
FOXA1P55317 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.08■□□□□ 0.8
FOXA1P55317 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.08■□□□□ 0.8
FOXA1P55317 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
FOXA1P55317 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
FOXA1P55317 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
FOXA1P55317 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
FOXA1P55317 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
FOXA1P55317 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
FOXA1P55317 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
FOXA1P55317 AC020907.5-201ENST00000624372 1936 ntBASIC20.08■□□□□ 0.8
FOXA1P55317 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
FOXA1P55317 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXA1P55317 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
FOXA1P55317 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
FOXA1P55317 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXA1P55317 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXA1P55317 AP004607.4-201ENST00000530158 1459 ntBASIC20.07■□□□□ 0.8
FOXA1P55317 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.07■□□□□ 0.8
FOXA1P55317 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
FOXA1P55317 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
FOXA1P55317 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.07■□□□□ 0.8
FOXA1P55317 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.07■□□□□ 0.8
FOXA1P55317 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
FOXA1P55317 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.07■□□□□ 0.8
FOXA1P55317 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.07■□□□□ 0.8
FOXA1P55317 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.07■□□□□ 0.8
FOXA1P55317 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.07■□□□□ 0.8
FOXA1P55317 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.07■□□□□ 0.8
FOXA1P55317 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
FOXA1P55317 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXA1P55317 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.07■□□□□ 0.8
FOXA1P55317 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
FOXA1P55317 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.06■□□□□ 0.8
FOXA1P55317 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
FOXA1P55317 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
FOXA1P55317 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
FOXA1P55317 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
FOXA1P55317 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
FOXA1P55317 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
FOXA1P55317 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
FOXA1P55317 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
FOXA1P55317 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
FOXA1P55317 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.06■□□□□ 0.8
FOXA1P55317 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.06■□□□□ 0.8
FOXA1P55317 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
FOXA1P55317 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
FOXA1P55317 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.06■□□□□ 0.8
FOXA1P55317 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
FOXA1P55317 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.06■□□□□ 0.8
FOXA1P55317 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
FOXA1P55317 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
FOXA1P55317 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.05■□□□□ 0.8
FOXA1P55317 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.05■□□□□ 0.8
FOXA1P55317 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
FOXA1P55317 AC011484.1-201ENST00000377652 1995 ntBASIC20.05■□□□□ 0.8
FOXA1P55317 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
FOXA1P55317 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
FOXA1P55317 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
FOXA1P55317 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
FOXA1P55317 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
FOXA1P55317 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
FOXA1P55317 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
FOXA1P55317 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.05■□□□□ 0.8
FOXA1P55317 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
FOXA1P55317 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
FOXA1P55317 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
FOXA1P55317 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
FOXA1P55317 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
FOXA1P55317 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.04■□□□□ 0.8
FOXA1P55317 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.04■□□□□ 0.8
FOXA1P55317 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
FOXA1P55317 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
FOXA1P55317 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.04■□□□□ 0.8
FOXA1P55317 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
FOXA1P55317 AL358852.1-201ENST00000623174 1268 ntBASIC20.04■□□□□ 0.8
FOXA1P55317 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.04■□□□□ 0.8
FOXA1P55317 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
FOXA1P55317 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
FOXA1P55317 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
FOXA1P55317 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.04■□□□□ 0.8
FOXA1P55317 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
FOXA1P55317 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
FOXA1P55317 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
FOXA1P55317 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
FOXA1P55317 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.04■□□□□ 0.8
FOXA1P55317 AL512408.1-201ENST00000569378 2000 ntBASIC20.03■□□□□ 0.8
FOXA1P55317 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
FOXA1P55317 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.03■□□□□ 0.8
FOXA1P55317 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.03■□□□□ 0.8
FOXA1P55317 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
FOXA1P55317 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
FOXA1P55317 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.03■□□□□ 0.8
FOXA1P55317 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms