Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
XRCC1P18887 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
XRCC1P18887 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
XRCC1P18887 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
XRCC1P18887 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.64■□□□□ 0.9
XRCC1P18887 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
XRCC1P18887 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
XRCC1P18887 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
XRCC1P18887 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.64■□□□□ 0.89
XRCC1P18887 MFSD11-216ENST00000590393 1141 ntBASIC20.64■□□□□ 0.89
XRCC1P18887 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.64■□□□□ 0.89
XRCC1P18887 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.64■□□□□ 0.89
XRCC1P18887 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.63■□□□□ 0.89
XRCC1P18887 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
XRCC1P18887 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
XRCC1P18887 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
XRCC1P18887 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.63■□□□□ 0.89
XRCC1P18887 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
XRCC1P18887 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
XRCC1P18887 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.63■□□□□ 0.89
XRCC1P18887 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
XRCC1P18887 AC026185.1-201ENST00000445748 174 ntBASIC20.63■□□□□ 0.89
XRCC1P18887 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.63■□□□□ 0.89
XRCC1P18887 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.63■□□□□ 0.89
XRCC1P18887 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.63■□□□□ 0.89
XRCC1P18887 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.63■□□□□ 0.89
XRCC1P18887 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.63■□□□□ 0.89
XRCC1P18887 MYCNOS-205ENST00000641950 531 ntBASIC20.63■□□□□ 0.89
XRCC1P18887 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
XRCC1P18887 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.63■□□□□ 0.89
XRCC1P18887 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
XRCC1P18887 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.63■□□□□ 0.89
XRCC1P18887 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
XRCC1P18887 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
XRCC1P18887 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
XRCC1P18887 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
XRCC1P18887 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
XRCC1P18887 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
XRCC1P18887 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
XRCC1P18887 AC003102.1-202ENST00000563394 1796 ntBASIC20.62■□□□□ 0.89
XRCC1P18887 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
XRCC1P18887 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
XRCC1P18887 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
XRCC1P18887 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.62■□□□□ 0.89
XRCC1P18887 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.62■□□□□ 0.89
XRCC1P18887 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.62■□□□□ 0.89
XRCC1P18887 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.62■□□□□ 0.89
XRCC1P18887 SLC7A5P1-201ENST00000568957 537 ntBASIC20.62■□□□□ 0.89
XRCC1P18887 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
XRCC1P18887 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
XRCC1P18887 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
XRCC1P18887 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
XRCC1P18887 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
XRCC1P18887 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
XRCC1P18887 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
XRCC1P18887 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.61■□□□□ 0.89
XRCC1P18887 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
XRCC1P18887 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
XRCC1P18887 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
XRCC1P18887 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
XRCC1P18887 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
XRCC1P18887 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
XRCC1P18887 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.61■□□□□ 0.89
XRCC1P18887 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
XRCC1P18887 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
XRCC1P18887 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.61■□□□□ 0.89
XRCC1P18887 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
XRCC1P18887 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
XRCC1P18887 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.61■□□□□ 0.89
XRCC1P18887 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
XRCC1P18887 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
XRCC1P18887 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.61■□□□□ 0.89
XRCC1P18887 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
XRCC1P18887 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
XRCC1P18887 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.6■□□□□ 0.89
XRCC1P18887 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
XRCC1P18887 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
XRCC1P18887 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
XRCC1P18887 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
XRCC1P18887 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
XRCC1P18887 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.6■□□□□ 0.89
XRCC1P18887 AC008175.2-201ENST00000612840 297 ntBASIC20.6■□□□□ 0.89
XRCC1P18887 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
XRCC1P18887 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
XRCC1P18887 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
XRCC1P18887 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
XRCC1P18887 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
XRCC1P18887 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
XRCC1P18887 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
XRCC1P18887 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
XRCC1P18887 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.59■□□□□ 0.89
XRCC1P18887 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
XRCC1P18887 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.59■□□□□ 0.89
XRCC1P18887 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.59■□□□□ 0.89
XRCC1P18887 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.59■□□□□ 0.89
XRCC1P18887 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.59■□□□□ 0.89
XRCC1P18887 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.59■□□□□ 0.89
XRCC1P18887 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.59■□□□□ 0.89
XRCC1P18887 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
XRCC1P18887 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms