Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB3O15347 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB3O15347 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB3O15347 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB3O15347 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGB3O15347 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB3O15347 RARRES2P2-201ENST00000394842 485 ntBASIC16.68■□□□□ 0.26
HMGB3O15347 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGB3O15347 TK2-202ENST00000417693 1046 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGB3O15347 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB3O15347 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC16.68■□□□□ 0.26
HMGB3O15347 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGB3O15347 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
HMGB3O15347 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB3O15347 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB3O15347 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB3O15347 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB3O15347 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB3O15347 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC16.68■□□□□ 0.26
HMGB3O15347 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC16.67■□□□□ 0.26
HMGB3O15347 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB3O15347 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB3O15347 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB3O15347 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB3O15347 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB3O15347 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB3O15347 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB3O15347 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB3O15347 BEX3-202ENST00000372634 753 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB3O15347 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB3O15347 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB3O15347 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB3O15347 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
HMGB3O15347 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
HMGB3O15347 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC16.67■□□□□ 0.26
HMGB3O15347 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB3O15347 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
HMGB3O15347 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB3O15347 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
HMGB3O15347 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB3O15347 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC16.67■□□□□ 0.26
HMGB3O15347 ME2-216ENST00000639850 2331 ntTSL 5 BASIC16.67■□□□□ 0.26
HMGB3O15347 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC16.67■□□□□ 0.26
HMGB3O15347 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
HMGB3O15347 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGB3O15347 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB3O15347 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB3O15347 OXCT2P1-201ENST00000447263 1535 ntBASIC16.66■□□□□ 0.26
HMGB3O15347 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
HMGB3O15347 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB3O15347 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB3O15347 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
HMGB3O15347 MCC-208ENST00000514701 2855 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGB3O15347 AC087289.5-201ENST00000586076 3175 ntBASIC16.66■□□□□ 0.26
HMGB3O15347 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HMGB3O15347 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB3O15347 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB3O15347 AC010980.1-201ENST00000587192 1142 ntBASIC16.66■□□□□ 0.26
HMGB3O15347 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HMGB3O15347 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.66■□□□□ 0.26
HMGB3O15347 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB3O15347 AL049796.1-201ENST00000565336 1766 ntBASIC16.66■□□□□ 0.26
HMGB3O15347 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGB3O15347 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGB3O15347 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB3O15347 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC16.66■□□□□ 0.26
HMGB3O15347 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB3O15347 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
HMGB3O15347 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGB3O15347 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB3O15347 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB3O15347 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HMGB3O15347 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB3O15347 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB3O15347 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
HMGB3O15347 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB3O15347 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGB3O15347 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
HMGB3O15347 ME2-218ENST00000640965 2476 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGB3O15347 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB3O15347 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB3O15347 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGB3O15347 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGB3O15347 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
HMGB3O15347 C17orf82-201ENST00000623772 1530 ntBASIC16.65■□□□□ 0.26
HMGB3O15347 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB3O15347 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
HMGB3O15347 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC16.64■□□□□ 0.26
HMGB3O15347 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB3O15347 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB3O15347 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB3O15347 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB3O15347 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGB3O15347 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB3O15347 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
HMGB3O15347 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGB3O15347 AC073314.1-201ENST00000568729 2216 ntBASIC16.64■□□□□ 0.25
HMGB3O15347 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB3O15347 SENP5-202ENST00000419026 973 ntTSL 3 BASIC16.64■□□□□ 0.25
HMGB3O15347 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms