Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS29Q9UBQ0 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
VPS29Q9UBQ0 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VPS29Q9UBQ0 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS29Q9UBQ0 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VPS29Q9UBQ0 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 TERF1P2-201ENST00000583350 1212 ntBASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS29Q9UBQ0 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.78
VPS29Q9UBQ0 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.89■□□□□ 0.78
VPS29Q9UBQ0 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS29Q9UBQ0 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS29Q9UBQ0 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.77
VPS29Q9UBQ0 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
VPS29Q9UBQ0 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS29Q9UBQ0 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS29Q9UBQ0 FEM1AP1-201ENST00000431297 1995 ntBASIC19.89■□□□□ 0.77
VPS29Q9UBQ0 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.89■□□□□ 0.77
VPS29Q9UBQ0 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS29Q9UBQ0 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS29Q9UBQ0 SP2-202ENST00000613139 908 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS29Q9UBQ0 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.89■□□□□ 0.77
VPS29Q9UBQ0 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
VPS29Q9UBQ0 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS29Q9UBQ0 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS29Q9UBQ0 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS29Q9UBQ0 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.88■□□□□ 0.77
VPS29Q9UBQ0 KRT16P2-201ENST00000414673 1423 ntBASIC19.88■□□□□ 0.77
VPS29Q9UBQ0 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS29Q9UBQ0 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS29Q9UBQ0 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS29Q9UBQ0 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.88■□□□□ 0.77
VPS29Q9UBQ0 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
VPS29Q9UBQ0 AC010141.2-201ENST00000452426 721 ntBASIC19.88■□□□□ 0.77
VPS29Q9UBQ0 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.88■□□□□ 0.77
VPS29Q9UBQ0 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.88■□□□□ 0.77
VPS29Q9UBQ0 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.88■□□□□ 0.77
VPS29Q9UBQ0 AC120498.10-201ENST00000621827 505 ntBASIC19.88■□□□□ 0.77
VPS29Q9UBQ0 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS29Q9UBQ0 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS29Q9UBQ0 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
VPS29Q9UBQ0 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS29Q9UBQ0 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS29Q9UBQ0 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS29Q9UBQ0 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.87■□□□□ 0.77
VPS29Q9UBQ0 LINC01521-201ENST00000504184 1943 ntBASIC19.87■□□□□ 0.77
VPS29Q9UBQ0 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS29Q9UBQ0 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS29Q9UBQ0 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS29Q9UBQ0 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
VPS29Q9UBQ0 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS29Q9UBQ0 AC104187.1-201ENST00000607510 612 ntBASIC19.87■□□□□ 0.77
VPS29Q9UBQ0 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS29Q9UBQ0 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.87■□□□□ 0.77
VPS29Q9UBQ0 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS29Q9UBQ0 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS29Q9UBQ0 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 ZNRF2P3-201ENST00000424200 374 ntBASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 DUX4L2-201ENST00000561772 1275 ntBASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 CCDC92B-201ENST00000575506 885 ntBASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 DUX4L6-201ENST00000626483 1275 ntBASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 DUX4L1-201ENST00000627662 1275 ntBASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 DUX4L8-201ENST00000629013 1275 ntBASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 DUX4L3-201ENST00000630187 1275 ntBASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 DUX4L7-201ENST00000630678 1275 ntBASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 DUX4L5-201ENST00000630834 1275 ntBASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 AC011484.1-201ENST00000377652 1995 ntBASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms