Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC079140.4-201ENST00000507448 529 ntBASIC21.46■■□□□ 1.03
PCDH9Q9HC56 KRT18P14-201ENST00000534205 1250 ntBASIC21.46■■□□□ 1.03
PCDH9Q9HC56 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.46■■□□□ 1.03
PCDH9Q9HC56 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.46■■□□□ 1.03
PCDH9Q9HC56 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDH9Q9HC56 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDH9Q9HC56 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDH9Q9HC56 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDH9Q9HC56 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDH9Q9HC56 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDH9Q9HC56 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDH9Q9HC56 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDH9Q9HC56 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDH9Q9HC56 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
PCDH9Q9HC56 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.03
PCDH9Q9HC56 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 AC026271.2-201ENST00000428091 497 ntBASIC21.45■■□□□ 1.02
PCDH9Q9HC56 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 AC087623.3-201ENST00000607047 1098 ntBASIC21.45■■□□□ 1.02
PCDH9Q9HC56 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDH9Q9HC56 AP005212.1-201ENST00000581547 1997 ntBASIC21.45■■□□□ 1.02
PCDH9Q9HC56 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDH9Q9HC56 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDH9Q9HC56 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.44■■□□□ 1.02
PCDH9Q9HC56 GABARAPL3-202ENST00000624044 1851 ntBASIC21.44■■□□□ 1.02
PCDH9Q9HC56 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDH9Q9HC56 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDH9Q9HC56 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
PCDH9Q9HC56 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PCDH9Q9HC56 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDH9Q9HC56 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PCDH9Q9HC56 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDH9Q9HC56 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDH9Q9HC56 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.44■■□□□ 1.02
PCDH9Q9HC56 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
PCDH9Q9HC56 AC121338.2-201ENST00000622535 1744 ntBASIC21.43■■□□□ 1.02
PCDH9Q9HC56 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.43■■□□□ 1.02
PCDH9Q9HC56 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCDH9Q9HC56 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.42■■□□□ 1.02
PCDH9Q9HC56 MIR935-201ENST00000401179 91 ntBASIC21.42■■□□□ 1.02
PCDH9Q9HC56 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.42■■□□□ 1.02
PCDH9Q9HC56 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
PCDH9Q9HC56 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCDH9Q9HC56 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.42■■□□□ 1.02
PCDH9Q9HC56 DUX4L2-201ENST00000561772 1275 ntBASIC21.42■■□□□ 1.02
PCDH9Q9HC56 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.42■■□□□ 1.02
PCDH9Q9HC56 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PCDH9Q9HC56 DUX4L6-201ENST00000626483 1275 ntBASIC21.42■■□□□ 1.02
PCDH9Q9HC56 DUX4L1-201ENST00000627662 1275 ntBASIC21.42■■□□□ 1.02
PCDH9Q9HC56 DUX4L8-201ENST00000629013 1275 ntBASIC21.42■■□□□ 1.02
PCDH9Q9HC56 DUX4L3-201ENST00000630187 1275 ntBASIC21.42■■□□□ 1.02
PCDH9Q9HC56 DUX4L7-201ENST00000630678 1275 ntBASIC21.42■■□□□ 1.02
PCDH9Q9HC56 DUX4L5-201ENST00000630834 1275 ntBASIC21.42■■□□□ 1.02
PCDH9Q9HC56 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDH9Q9HC56 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDH9Q9HC56 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PCDH9Q9HC56 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.41■■□□□ 1.02
PCDH9Q9HC56 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDH9Q9HC56 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDH9Q9HC56 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.41■■□□□ 1.02
PCDH9Q9HC56 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDH9Q9HC56 AC073314.1-201ENST00000568729 2216 ntBASIC21.41■■□□□ 1.02
PCDH9Q9HC56 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms