Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.58■□□□□ 0.88
TRIM4Q9C037 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.58■□□□□ 0.88
TRIM4Q9C037 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM4Q9C037 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
TRIM4Q9C037 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM4Q9C037 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM4Q9C037 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.57■□□□□ 0.88
TRIM4Q9C037 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
TRIM4Q9C037 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM4Q9C037 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
TRIM4Q9C037 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM4Q9C037 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM4Q9C037 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM4Q9C037 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.57■□□□□ 0.88
TRIM4Q9C037 AC016769.1-201ENST00000409132 1010 ntBASIC20.57■□□□□ 0.88
TRIM4Q9C037 TSPY20P-201ENST00000450910 630 ntBASIC20.57■□□□□ 0.88
TRIM4Q9C037 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM4Q9C037 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.57■□□□□ 0.88
TRIM4Q9C037 AL020996.1-203ENST00000536896 2307 ntBASIC20.57■□□□□ 0.88
TRIM4Q9C037 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.57■□□□□ 0.88
TRIM4Q9C037 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.57■□□□□ 0.88
TRIM4Q9C037 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM4Q9C037 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM4Q9C037 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.57■□□□□ 0.88
TRIM4Q9C037 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM4Q9C037 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.57■□□□□ 0.88
TRIM4Q9C037 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM4Q9C037 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM4Q9C037 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
TRIM4Q9C037 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM4Q9C037 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM4Q9C037 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM4Q9C037 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.56■□□□□ 0.88
TRIM4Q9C037 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM4Q9C037 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM4Q9C037 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.56■□□□□ 0.88
TRIM4Q9C037 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM4Q9C037 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.56■□□□□ 0.88
TRIM4Q9C037 AC006970.2-201ENST00000450065 779 ntBASIC20.56■□□□□ 0.88
TRIM4Q9C037 CD99P1-205ENST00000527459 561 ntBASIC20.56■□□□□ 0.88
TRIM4Q9C037 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM4Q9C037 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM4Q9C037 TERF1P2-201ENST00000583350 1212 ntBASIC20.56■□□□□ 0.88
TRIM4Q9C037 AL354811.1-201ENST00000610286 706 ntBASIC20.56■□□□□ 0.88
TRIM4Q9C037 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM4Q9C037 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM4Q9C037 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM4Q9C037 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.56■□□□□ 0.88
TRIM4Q9C037 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM4Q9C037 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM4Q9C037 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM4Q9C037 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM4Q9C037 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.56■□□□□ 0.88
TRIM4Q9C037 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM4Q9C037 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM4Q9C037 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM4Q9C037 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM4Q9C037 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
TRIM4Q9C037 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM4Q9C037 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM4Q9C037 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.55■□□□□ 0.88
TRIM4Q9C037 MIR572-201ENST00000384983 95 ntBASIC20.55■□□□□ 0.88
TRIM4Q9C037 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.55■□□□□ 0.88
TRIM4Q9C037 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.55■□□□□ 0.88
TRIM4Q9C037 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.55■□□□□ 0.88
TRIM4Q9C037 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.55■□□□□ 0.88
TRIM4Q9C037 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.55■□□□□ 0.88
TRIM4Q9C037 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM4Q9C037 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM4Q9C037 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
TRIM4Q9C037 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.55■□□□□ 0.88
TRIM4Q9C037 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM4Q9C037 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM4Q9C037 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.55■□□□□ 0.88
TRIM4Q9C037 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM4Q9C037 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM4Q9C037 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM4Q9C037 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM4Q9C037 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM4Q9C037 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM4Q9C037 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM4Q9C037 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.54■□□□□ 0.88
TRIM4Q9C037 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.54■□□□□ 0.88
TRIM4Q9C037 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.54■□□□□ 0.88
TRIM4Q9C037 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.54■□□□□ 0.88
TRIM4Q9C037 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM4Q9C037 LINC02228-203ENST00000641970 1355 ntBASIC20.54■□□□□ 0.88
TRIM4Q9C037 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM4Q9C037 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
TRIM4Q9C037 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM4Q9C037 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM4Q9C037 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM4Q9C037 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM4Q9C037 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM4Q9C037 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM4Q9C037 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
TRIM4Q9C037 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC20.53■□□□□ 0.88
TRIM4Q9C037 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM4Q9C037 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
TRIM4Q9C037 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms