Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 AC105036.2-201ENST00000569468 176 ntBASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 EP400NL-214ENST00000641289 2402 ntBASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 KRT16P2-201ENST00000414673 1423 ntBASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
CLIP3Q96DZ5 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
CLIP3Q96DZ5 AC061975.6-201ENST00000579045 1553 ntBASIC19.95■□□□□ 0.78
CLIP3Q96DZ5 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLIP3Q96DZ5 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CLIP3Q96DZ5 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.95■□□□□ 0.78
CLIP3Q96DZ5 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.95■□□□□ 0.78
CLIP3Q96DZ5 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.95■□□□□ 0.78
CLIP3Q96DZ5 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.95■□□□□ 0.78
CLIP3Q96DZ5 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CLIP3Q96DZ5 AC008694.1-202ENST00000636953 945 ntBASIC19.95■□□□□ 0.78
CLIP3Q96DZ5 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLIP3Q96DZ5 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.95■□□□□ 0.78
CLIP3Q96DZ5 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CLIP3Q96DZ5 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLIP3Q96DZ5 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CLIP3Q96DZ5 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.95■□□□□ 0.78
CLIP3Q96DZ5 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 AC068338.2-201ENST00000563278 1430 ntBASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 AC133552.2-202ENST00000575694 574 ntBASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 AC026471.6-201ENST00000622954 1905 ntBASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.94■□□□□ 0.78
CLIP3Q96DZ5 AC092667.1-201ENST00000434301 2586 ntBASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 CYP2T1P-201ENST00000432607 1285 ntBASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 AC007322.4-201ENST00000509611 723 ntBASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 FAM99A-202ENST00000538190 1989 ntBASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CLIP3Q96DZ5 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLIP3Q96DZ5 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CLIP3Q96DZ5 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.92■□□□□ 0.78
CLIP3Q96DZ5 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLIP3Q96DZ5 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
CLIP3Q96DZ5 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms