Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC27.18■■□□□ 1.94
RTF1Q92541 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC27.18■■□□□ 1.94
RTF1Q92541 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
RTF1Q92541 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
RTF1Q92541 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC27.18■■□□□ 1.94
RTF1Q92541 TUB-203ENST00000534099 1759 ntTSL 2 BASIC27.17■■□□□ 1.94
RTF1Q92541 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
RTF1Q92541 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC27.17■■□□□ 1.94
RTF1Q92541 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
RTF1Q92541 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
RTF1Q92541 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC27.17■■□□□ 1.94
RTF1Q92541 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC27.17■■□□□ 1.94
RTF1Q92541 AC007322.3-201ENST00000426526 701 ntBASIC27.17■■□□□ 1.94
RTF1Q92541 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC27.17■■□□□ 1.94
RTF1Q92541 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
RTF1Q92541 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC27.17■■□□□ 1.94
RTF1Q92541 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC27.17■■□□□ 1.94
RTF1Q92541 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC27.17■■□□□ 1.94
RTF1Q92541 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
RTF1Q92541 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC27.17■■□□□ 1.94
RTF1Q92541 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC27.16■■□□□ 1.94
RTF1Q92541 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC27.16■■□□□ 1.94
RTF1Q92541 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
RTF1Q92541 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC27.16■■□□□ 1.94
RTF1Q92541 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC27.16■■□□□ 1.94
RTF1Q92541 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC27.16■■□□□ 1.94
RTF1Q92541 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC27.16■■□□□ 1.94
RTF1Q92541 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC27.16■■□□□ 1.94
RTF1Q92541 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC27.16■■□□□ 1.94
RTF1Q92541 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
RTF1Q92541 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
RTF1Q92541 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC27.16■■□□□ 1.94
RTF1Q92541 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
RTF1Q92541 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
RTF1Q92541 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC27.16■■□□□ 1.94
RTF1Q92541 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC27.16■■□□□ 1.94
RTF1Q92541 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
RTF1Q92541 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC27.15■■□□□ 1.94
RTF1Q92541 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC27.15■■□□□ 1.94
RTF1Q92541 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
RTF1Q92541 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
RTF1Q92541 SAPCD2P1-201ENST00000395413 1184 ntBASIC27.15■■□□□ 1.94
RTF1Q92541 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC27.15■■□□□ 1.94
RTF1Q92541 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
RTF1Q92541 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
RTF1Q92541 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
RTF1Q92541 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
RTF1Q92541 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.94
RTF1Q92541 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC27.14■■□□□ 1.94
RTF1Q92541 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
RTF1Q92541 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.94
RTF1Q92541 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
RTF1Q92541 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
RTF1Q92541 VMO1-204ENST00000441199 741 ntTSL 2 BASIC27.14■■□□□ 1.94
RTF1Q92541 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
RTF1Q92541 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC27.14■■□□□ 1.94
RTF1Q92541 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC27.14■■□□□ 1.94
RTF1Q92541 AC100791.3-201ENST00000617619 330 ntBASIC27.14■■□□□ 1.94
RTF1Q92541 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC27.14■■□□□ 1.94
RTF1Q92541 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
RTF1Q92541 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC27.14■■□□□ 1.93
RTF1Q92541 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC27.13■■□□□ 1.93
RTF1Q92541 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
RTF1Q92541 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
RTF1Q92541 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC27.13■■□□□ 1.93
RTF1Q92541 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC27.13■■□□□ 1.93
RTF1Q92541 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
RTF1Q92541 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
RTF1Q92541 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC27.13■■□□□ 1.93
RTF1Q92541 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC27.13■■□□□ 1.93
RTF1Q92541 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
RTF1Q92541 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC27.13■■□□□ 1.93
RTF1Q92541 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC27.13■■□□□ 1.93
RTF1Q92541 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC27.13■■□□□ 1.93
RTF1Q92541 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
RTF1Q92541 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC27.13■■□□□ 1.93
RTF1Q92541 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
RTF1Q92541 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
RTF1Q92541 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC27.12■■□□□ 1.93
RTF1Q92541 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
RTF1Q92541 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC27.12■■□□□ 1.93
RTF1Q92541 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC27.12■■□□□ 1.93
RTF1Q92541 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
RTF1Q92541 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
RTF1Q92541 LSM12P1-201ENST00000411836 588 ntBASIC27.12■■□□□ 1.93
RTF1Q92541 AL355472.2-201ENST00000422958 438 ntBASIC27.12■■□□□ 1.93
RTF1Q92541 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC27.12■■□□□ 1.93
RTF1Q92541 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC27.12■■□□□ 1.93
RTF1Q92541 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC27.12■■□□□ 1.93
RTF1Q92541 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC27.12■■□□□ 1.93
RTF1Q92541 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC27.12■■□□□ 1.93
RTF1Q92541 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
RTF1Q92541 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
RTF1Q92541 AC244015.2-201ENST00000616358 1861 ntBASIC27.12■■□□□ 1.93
RTF1Q92541 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC27.12■■□□□ 1.93
RTF1Q92541 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC27.12■■□□□ 1.93
RTF1Q92541 AC116050.2-201ENST00000612102 1779 ntBASIC27.12■■□□□ 1.93
RTF1Q92541 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
RTF1Q92541 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
RTF1Q92541 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms