Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 C9orf163-202ENST00000624034 2573 ntBASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 RARG-204ENST00000543726 1779 ntTSL 2 BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 AC133561.5-201ENST00000635547 218 ntBASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 ME2-208ENST00000638937 2471 ntTSL 5 BASIC25.67■■□□□ 1.7
CCDC88AQ3V6T2 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
CCDC88AQ3V6T2 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC25.66■■□□□ 1.7
CCDC88AQ3V6T2 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC25.66■■□□□ 1.7
CCDC88AQ3V6T2 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC88AQ3V6T2 SLC29A4P2-201ENST00000504749 1089 ntBASIC25.66■■□□□ 1.7
CCDC88AQ3V6T2 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC25.66■■□□□ 1.7
CCDC88AQ3V6T2 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC88AQ3V6T2 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC25.66■■□□□ 1.7
CCDC88AQ3V6T2 AC012306.2-201ENST00000609350 630 ntBASIC25.66■■□□□ 1.7
CCDC88AQ3V6T2 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC88AQ3V6T2 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CCDC88AQ3V6T2 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CCDC88AQ3V6T2 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
CCDC88AQ3V6T2 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC25.65■■□□□ 1.7
CCDC88AQ3V6T2 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC25.65■■□□□ 1.7
CCDC88AQ3V6T2 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC25.65■■□□□ 1.7
CCDC88AQ3V6T2 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CCDC88AQ3V6T2 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
CCDC88AQ3V6T2 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
CCDC88AQ3V6T2 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC25.65■■□□□ 1.7
CCDC88AQ3V6T2 OR2A1-AS1-207ENST00000486094 819 ntBASIC25.65■■□□□ 1.7
CCDC88AQ3V6T2 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
CCDC88AQ3V6T2 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC25.65■■□□□ 1.7
CCDC88AQ3V6T2 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
CCDC88AQ3V6T2 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
CCDC88AQ3V6T2 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CCDC88AQ3V6T2 C1orf229-201ENST00000623686 2258 ntBASIC25.64■■□□□ 1.7
CCDC88AQ3V6T2 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CCDC88AQ3V6T2 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CCDC88AQ3V6T2 REXO2-208ENST00000539754 791 ntTSL 2 BASIC25.64■■□□□ 1.7
CCDC88AQ3V6T2 SNX21-213ENST00000614929 587 ntTSL 5 BASIC25.64■■□□□ 1.7
CCDC88AQ3V6T2 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC25.64■■□□□ 1.7
CCDC88AQ3V6T2 AC080038.3-201ENST00000623346 1952 ntBASIC25.64■■□□□ 1.7
CCDC88AQ3V6T2 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CCDC88AQ3V6T2 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CCDC88AQ3V6T2 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CCDC88AQ3V6T2 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
CCDC88AQ3V6T2 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC25.64■■□□□ 1.69
CCDC88AQ3V6T2 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC25.64■■□□□ 1.69
CCDC88AQ3V6T2 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC25.64■■□□□ 1.69
CCDC88AQ3V6T2 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CCDC88AQ3V6T2 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CCDC88AQ3V6T2 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.69
CCDC88AQ3V6T2 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.69
CCDC88AQ3V6T2 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC25.64■■□□□ 1.69
CCDC88AQ3V6T2 AL049637.2-201ENST00000641778 930 ntBASIC25.64■■□□□ 1.69
CCDC88AQ3V6T2 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CCDC88AQ3V6T2 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC25.63■■□□□ 1.69
CCDC88AQ3V6T2 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC88AQ3V6T2 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC25.63■■□□□ 1.69
CCDC88AQ3V6T2 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC88AQ3V6T2 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC25.63■■□□□ 1.69
CCDC88AQ3V6T2 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC25.63■■□□□ 1.69
CCDC88AQ3V6T2 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC25.63■■□□□ 1.69
CCDC88AQ3V6T2 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC25.63■■□□□ 1.69
CCDC88AQ3V6T2 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC25.63■■□□□ 1.69
CCDC88AQ3V6T2 AC100791.3-201ENST00000617619 330 ntBASIC25.63■■□□□ 1.69
CCDC88AQ3V6T2 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC25.63■■□□□ 1.69
CCDC88AQ3V6T2 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC25.63■■□□□ 1.69
CCDC88AQ3V6T2 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC25.63■■□□□ 1.69
CCDC88AQ3V6T2 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC88AQ3V6T2 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC88AQ3V6T2 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC88AQ3V6T2 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
CCDC88AQ3V6T2 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC25.62■■□□□ 1.69
CCDC88AQ3V6T2 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC88AQ3V6T2 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC88AQ3V6T2 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC88AQ3V6T2 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
CCDC88AQ3V6T2 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC88AQ3V6T2 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC88AQ3V6T2 LY6E-205ENST00000519611 635 ntTSL 3 BASIC25.62■■□□□ 1.69
CCDC88AQ3V6T2 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC25.62■■□□□ 1.69
CCDC88AQ3V6T2 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC25.62■■□□□ 1.69
CCDC88AQ3V6T2 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC88AQ3V6T2 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC25.61■■□□□ 1.69
CCDC88AQ3V6T2 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms