Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CX3CL1P78423 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC16.7■□□□□ 0.26
CX3CL1P78423 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CX3CL1P78423 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CX3CL1P78423 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CX3CL1P78423 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CX3CL1P78423 STX5-203ENST00000394690 1568 ntTSL 5 BASIC16.7■□□□□ 0.26
CX3CL1P78423 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CX3CL1P78423 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CX3CL1P78423 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
CX3CL1P78423 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC16.7■□□□□ 0.26
CX3CL1P78423 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC16.7■□□□□ 0.26
CX3CL1P78423 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC16.7■□□□□ 0.26
CX3CL1P78423 PLD4-205ENST00000553861 667 ntTSL 2 BASIC16.7■□□□□ 0.26
CX3CL1P78423 DUX4L2-201ENST00000561772 1275 ntBASIC16.7■□□□□ 0.26
CX3CL1P78423 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC16.7■□□□□ 0.26
CX3CL1P78423 AC087623.3-201ENST00000607047 1098 ntBASIC16.7■□□□□ 0.26
CX3CL1P78423 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC16.7■□□□□ 0.26
CX3CL1P78423 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC16.7■□□□□ 0.26
CX3CL1P78423 DUX4L6-201ENST00000626483 1275 ntBASIC16.7■□□□□ 0.26
CX3CL1P78423 DUX4L1-201ENST00000627662 1275 ntBASIC16.7■□□□□ 0.26
CX3CL1P78423 DUX4L8-201ENST00000629013 1275 ntBASIC16.7■□□□□ 0.26
CX3CL1P78423 DUX4L3-201ENST00000630187 1275 ntBASIC16.7■□□□□ 0.26
CX3CL1P78423 DUX4L7-201ENST00000630678 1275 ntBASIC16.7■□□□□ 0.26
CX3CL1P78423 DUX4L5-201ENST00000630834 1275 ntBASIC16.7■□□□□ 0.26
CX3CL1P78423 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CX3CL1P78423 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CX3CL1P78423 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
CX3CL1P78423 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC16.7■□□□□ 0.26
CX3CL1P78423 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC16.7■□□□□ 0.26
CX3CL1P78423 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CX3CL1P78423 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC16.69■□□□□ 0.26
CX3CL1P78423 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CX3CL1P78423 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CX3CL1P78423 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CX3CL1P78423 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CX3CL1P78423 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC16.69■□□□□ 0.26
CX3CL1P78423 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CX3CL1P78423 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC16.69■□□□□ 0.26
CX3CL1P78423 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CX3CL1P78423 AC034268.1-201ENST00000441047 882 ntBASIC16.69■□□□□ 0.26
CX3CL1P78423 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CX3CL1P78423 SERP1-208ENST00000491660 830 ntTSL 2 BASIC16.69■□□□□ 0.26
CX3CL1P78423 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC16.69■□□□□ 0.26
CX3CL1P78423 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC16.69■□□□□ 0.26
CX3CL1P78423 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC16.69■□□□□ 0.26
CX3CL1P78423 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CX3CL1P78423 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CX3CL1P78423 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CX3CL1P78423 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CX3CL1P78423 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CX3CL1P78423 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CX3CL1P78423 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CX3CL1P78423 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CX3CL1P78423 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CX3CL1P78423 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CX3CL1P78423 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CX3CL1P78423 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
CX3CL1P78423 AC026271.2-201ENST00000428091 497 ntBASIC16.68■□□□□ 0.26
CX3CL1P78423 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CX3CL1P78423 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC16.68■□□□□ 0.26
CX3CL1P78423 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CX3CL1P78423 TESC-206ENST00000541210 936 ntTSL 3 BASIC16.68■□□□□ 0.26
CX3CL1P78423 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC16.68■□□□□ 0.26
CX3CL1P78423 RARRES2P6-201ENST00000567333 442 ntBASIC16.68■□□□□ 0.26
CX3CL1P78423 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC16.68■□□□□ 0.26
CX3CL1P78423 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC16.68■□□□□ 0.26
CX3CL1P78423 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
CX3CL1P78423 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CX3CL1P78423 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
CX3CL1P78423 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CX3CL1P78423 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CX3CL1P78423 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
CX3CL1P78423 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CX3CL1P78423 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CX3CL1P78423 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CX3CL1P78423 AP004607.4-201ENST00000530158 1459 ntBASIC16.67■□□□□ 0.26
CX3CL1P78423 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CX3CL1P78423 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC16.67■□□□□ 0.26
CX3CL1P78423 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC16.67■□□□□ 0.26
CX3CL1P78423 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC16.67■□□□□ 0.26
CX3CL1P78423 HACD1-201ENST00000326961 773 ntTSL 2 BASIC16.67■□□□□ 0.26
CX3CL1P78423 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CX3CL1P78423 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC16.67■□□□□ 0.26
CX3CL1P78423 AC138907.5-202ENST00000569484 235 ntBASIC16.67■□□□□ 0.26
CX3CL1P78423 AC104187.1-201ENST00000607510 612 ntBASIC16.67■□□□□ 0.26
CX3CL1P78423 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
CX3CL1P78423 AC004854.2-201ENST00000608450 1441 ntBASIC16.67■□□□□ 0.26
CX3CL1P78423 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CX3CL1P78423 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CX3CL1P78423 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CX3CL1P78423 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CX3CL1P78423 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CX3CL1P78423 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CX3CL1P78423 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
CX3CL1P78423 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CX3CL1P78423 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
CX3CL1P78423 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC16.66■□□□□ 0.26
CX3CL1P78423 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
CX3CL1P78423 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms