Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 MET10YFR030W 3108 nt3.09□□□□□ -1.92
UPF3P48412 AKR1YDR264C 2295 nt3.09□□□□□ -1.92
UPF3P48412 SCY1YGL083W 2415 nt3.09□□□□□ -1.92
UPF3P48412 PUF6YDR496C 1971 nt3.09□□□□□ -1.92
UPF3P48412 PBS2YJL128C 2007 nt3.09□□□□□ -1.92
UPF3P48412 YOL057WYOL057W 2136 nt3.08□□□□□ -1.92
UPF3P48412 DSF2YBR007C 2211 nt3.08□□□□□ -1.92
UPF3P48412 YPR1YDR368W 939 nt3.08□□□□□ -1.92
UPF3P48412 RSM18YER050C 417 nt3.08□□□□□ -1.92
UPF3P48412 YFL012W-AYFL012W-A 375 nt3.08□□□□□ -1.92
UPF3P48412 MND1YGL183C 660 nt3.08□□□□□ -1.92
UPF3P48412 MIX23YBL107C 591 nt3.08□□□□□ -1.92
UPF3P48412 PCI8YIL071C 1335 nt3.08□□□□□ -1.92
UPF3P48412 SNT1YCR033W 3681 nt3.08□□□□□ -1.92
UPF3P48412 ITC1YGL133W 3795 nt3.07□□□□□ -1.92
UPF3P48412 TRM2YKR056W 1920 nt3.07□□□□□ -1.92
UPF3P48412 RRM3YHR031C 2172 nt3.07□□□□□ -1.92
UPF3P48412 FLO1YAR050W 4614 nt3.07□□□□□ -1.92
UPF3P48412 MST27YGL051W 705 nt3.07□□□□□ -1.92
UPF3P48412 MTM1YGR257C 1101 nt3.07□□□□□ -1.92
UPF3P48412 YIR020C-BYIR020C-B 735 nt3.07□□□□□ -1.92
UPF3P48412 ECM9YKR004C 1134 nt3.07□□□□□ -1.92
UPF3P48412 ATG38YLR211C 681 nt3.07□□□□□ -1.92
UPF3P48412 UNG1YML021C 1080 nt3.07□□□□□ -1.92
UPF3P48412 SEC14YMR079W 915 nt3.07□□□□□ -1.92
UPF3P48412 YOL029CYOL029C 606 nt3.07□□□□□ -1.92
UPF3P48412 SGT1YOR057W 1188 nt3.07□□□□□ -1.92
UPF3P48412 RGR1YLR071C 3249 nt3.07□□□□□ -1.92
UPF3P48412 RIF1YBR275C 5751 nt3.06□□□□□ -1.92
UPF3P48412 BAT1YHR208W 1182 nt3.06□□□□□ -1.92
UPF3P48412 RNR2YJL026W 1200 nt3.06□□□□□ -1.92
UPF3P48412 MRP49YKL167C 414 nt3.06□□□□□ -1.92
UPF3P48412 RPL8BYLL045C 771 nt3.06□□□□□ -1.92
UPF3P48412 CWC24YLR323C 780 nt3.06□□□□□ -1.92
UPF3P48412 YMR294W-AYMR294W-A 360 nt3.06□□□□□ -1.92
UPF3P48412 YNL303WYNL303W 348 nt3.06□□□□□ -1.92
UPF3P48412 YBR051WYBR051W 351 nt3.06□□□□□ -1.92
UPF3P48412 RRD2YPL152W 1077 nt3.06□□□□□ -1.92
UPF3P48412 YRR1YOR162C 2433 nt3.05□□□□□ -1.92
UPF3P48412 ADY4YLR227C 1482 nt3.05□□□□□ -1.92
UPF3P48412 CHO2YGR157W 2610 nt3.05□□□□□ -1.92
UPF3P48412 YGL063C-AYGL063C-A 150 nt3.05□□□□□ -1.92
UPF3P48412 AIM18YHR198C 966 nt3.05□□□□□ -1.92
UPF3P48412 YHR214C-DYHR214C-D 294 nt3.05□□□□□ -1.92
UPF3P48412 YIL054WYIL054W 318 nt3.05□□□□□ -1.92
UPF3P48412 YAR069CYAR069C 294 nt3.05□□□□□ -1.92
UPF3P48412 COX8YLR395C 237 nt3.05□□□□□ -1.92
UPF3P48412 NIP7YPL211W 546 nt3.05□□□□□ -1.92
UPF3P48412 YMR317WYMR317W 3423 nt3.05□□□□□ -1.92
UPF3P48412 FUN30YAL019W 3396 nt3.04□□□□□ -1.92
UPF3P48412 SPB1YCL054W 2526 nt3.04□□□□□ -1.92
UPF3P48412 MRS2YOR334W 1413 nt3.04□□□□□ -1.92
UPF3P48412 DYN1YKR054C 12279 nt3.04□□□□□ -1.92
UPF3P48412 YDR461C-AYDR461C-A 243 nt3.04□□□□□ -1.92
UPF3P48412 SNO3YFL060C 669 nt3.04□□□□□ -1.92
UPF3P48412 YGL082WYGL082W 1146 nt3.04□□□□□ -1.92
UPF3P48412 YGR053CYGR053C 852 nt3.04□□□□□ -1.92
UPF3P48412 YHR213WYHR213W 597 nt3.04□□□□□ -1.92
UPF3P48412 PRP21YJL203W 843 nt3.04□□□□□ -1.92
UPF3P48412 YAL037WYAL037W 804 nt3.04□□□□□ -1.92
UPF3P48412 TDA8YAL064C-A 381 nt3.04□□□□□ -1.92
UPF3P48412 YAR062WYAR062W 597 nt3.04□□□□□ -1.92
UPF3P48412 RCE1YMR274C 948 nt3.04□□□□□ -1.92
UPF3P48412 SNO2YNL334C 669 nt3.04□□□□□ -1.92
UPF3P48412 snR191snR191 274 nt3.04□□□□□ -1.92
UPF3P48412 RSN1YMR266W 2862 nt3.04□□□□□ -1.92
UPF3P48412 CHS2YBR038W 2892 nt3.04□□□□□ -1.92
UPF3P48412 15S_rRNA15S_rRNA 1649 nt3.04□□□□□ -1.92
UPF3P48412 FRE2YKL220C 2136 nt3.04□□□□□ -1.92
UPF3P48412 RPN3YER021W 1572 nt3.04□□□□□ -1.92
UPF3P48412 snR5snR5 204 nt3.03□□□□□ -1.92
UPF3P48412 YDR442WYDR442W 393 nt3.03□□□□□ -1.92
UPF3P48412 TDA2YER071C 381 nt3.03□□□□□ -1.92
UPF3P48412 YJL086CYJL086C 369 nt3.03□□□□□ -1.92
UPF3P48412 SRP21YKL122C 504 nt3.03□□□□□ -1.92
UPF3P48412 ILV5YLR355C 1188 nt3.03□□□□□ -1.92
UPF3P48412 SRL4YPL033C 846 nt3.03□□□□□ -1.92
UPF3P48412 SIP3YNL257C 3690 nt3.03□□□□□ -1.92
UPF3P48412 UTP15YMR093W 1542 nt3.03□□□□□ -1.92
UPF3P48412 FUS1YCL027W 1539 nt3.03□□□□□ -1.92
UPF3P48412 ERG28YER044C 447 nt3.02□□□□□ -1.93
UPF3P48412 IRC21YMR073C 606 nt3.02□□□□□ -1.93
UPF3P48412 YNR025CYNR025C 360 nt3.02□□□□□ -1.93
UPF3P48412 CSM4YPL200W 471 nt3.02□□□□□ -1.93
UPF3P48412 PIS1YPR113W 663 nt3.02□□□□□ -1.93
UPF3P48412 CSR2YPR030W 3366 nt3.02□□□□□ -1.93
UPF3P48412 SWC4YGR002C 1431 nt3.02□□□□□ -1.93
UPF3P48412 YCR090CYCR090C 549 nt3.01□□□□□ -1.93
UPF3P48412 DTD1YDL219W 453 nt3.01□□□□□ -1.93
UPF3P48412 YER091C-AYER091C-A 222 nt3.01□□□□□ -1.93
UPF3P48412 YHR054CYHR054C 1065 nt3.01□□□□□ -1.93
UPF3P48412 RPL20AYMR242C 519 nt3.01□□□□□ -1.93
UPF3P48412 YAP7YOL028C 738 nt3.01□□□□□ -1.93
UPF3P48412 MSN1YOL116W 1149 nt3.01□□□□□ -1.93
UPF3P48412 RRG8YPR116W 834 nt3.01□□□□□ -1.93
UPF3P48412 TAZ1YPR140W 1146 nt3.01□□□□□ -1.93
UPF3P48412 snR42snR42 351 nt3.01□□□□□ -1.93
UPF3P48412 YBR300CYBR300C 498 nt3.01□□□□□ -1.93
UPF3P48412 APC2YLR127C 2562 nt3.01□□□□□ -1.93
UPF3P48412 CEP3YMR168C 1827 nt3□□□□□ -1.93
Retrieved 100 of 7,029 protein–RNA pairs in 22.8 ms