Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
RFC3P40938 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
RFC3P40938 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFC3P40938 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFC3P40938 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFC3P40938 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.01■□□□□ 0.63
RFC3P40938 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.01■□□□□ 0.63
RFC3P40938 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.01■□□□□ 0.63
RFC3P40938 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RFC3P40938 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
RFC3P40938 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
RFC3P40938 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFC3P40938 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RFC3P40938 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.01■□□□□ 0.63
RFC3P40938 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.01■□□□□ 0.63
RFC3P40938 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.01■□□□□ 0.63
RFC3P40938 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFC3P40938 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RFC3P40938 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19■□□□□ 0.63
RFC3P40938 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
RFC3P40938 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
RFC3P40938 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RFC3P40938 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19■□□□□ 0.63
RFC3P40938 BX276092.2-201ENST00000417668 665 ntBASIC19■□□□□ 0.63
RFC3P40938 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RFC3P40938 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RFC3P40938 TSPY20P-201ENST00000450910 630 ntBASIC19■□□□□ 0.63
RFC3P40938 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19■□□□□ 0.63
RFC3P40938 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19■□□□□ 0.63
RFC3P40938 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
RFC3P40938 AC133041.1-202ENST00000642053 222 ntBASIC19■□□□□ 0.63
RFC3P40938 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
RFC3P40938 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RFC3P40938 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
RFC3P40938 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19■□□□□ 0.63
RFC3P40938 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
RFC3P40938 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RFC3P40938 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RFC3P40938 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RFC3P40938 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFC3P40938 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
RFC3P40938 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFC3P40938 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.99■□□□□ 0.63
RFC3P40938 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFC3P40938 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFC3P40938 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
RFC3P40938 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFC3P40938 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
RFC3P40938 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.99■□□□□ 0.63
RFC3P40938 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
RFC3P40938 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFC3P40938 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
RFC3P40938 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
RFC3P40938 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
RFC3P40938 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFC3P40938 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.98■□□□□ 0.63
RFC3P40938 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RFC3P40938 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RFC3P40938 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
RFC3P40938 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RFC3P40938 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
RFC3P40938 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RFC3P40938 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RFC3P40938 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
RFC3P40938 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.98■□□□□ 0.63
RFC3P40938 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.98■□□□□ 0.63
RFC3P40938 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
RFC3P40938 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.98■□□□□ 0.63
RFC3P40938 MIR4758-201ENST00000577688 71 ntBASIC18.98■□□□□ 0.63
RFC3P40938 MIR4651-201ENST00000582622 73 ntBASIC18.98■□□□□ 0.63
RFC3P40938 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
RFC3P40938 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
RFC3P40938 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
RFC3P40938 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RFC3P40938 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
RFC3P40938 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.98■□□□□ 0.63
RFC3P40938 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RFC3P40938 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RFC3P40938 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFC3P40938 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.97■□□□□ 0.63
RFC3P40938 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC18.97■□□□□ 0.63
RFC3P40938 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFC3P40938 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFC3P40938 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFC3P40938 AC245052.3-201ENST00000450182 901 ntBASIC18.97■□□□□ 0.63
RFC3P40938 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.97■□□□□ 0.63
RFC3P40938 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.97■□□□□ 0.63
RFC3P40938 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFC3P40938 AC243732.1-201ENST00000612648 864 ntBASIC18.97■□□□□ 0.63
RFC3P40938 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.97■□□□□ 0.63
RFC3P40938 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFC3P40938 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RFC3P40938 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFC3P40938 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFC3P40938 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC18.97■□□□□ 0.63
RFC3P40938 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.97■□□□□ 0.63
RFC3P40938 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFC3P40938 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
RFC3P40938 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFC3P40938 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms