Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA4Q9Y5G9 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA4Q9Y5G9 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA4Q9Y5G9 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA4Q9Y5G9 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.47■□□□□ 0.87
PCDHGA4Q9Y5G9 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
PCDHGA4Q9Y5G9 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.47■□□□□ 0.87
PCDHGA4Q9Y5G9 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
PCDHGA4Q9Y5G9 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.47■□□□□ 0.87
PCDHGA4Q9Y5G9 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA4Q9Y5G9 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA4Q9Y5G9 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA4Q9Y5G9 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA4Q9Y5G9 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA4Q9Y5G9 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA4Q9Y5G9 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA4Q9Y5G9 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA4Q9Y5G9 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA4Q9Y5G9 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA4Q9Y5G9 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA4Q9Y5G9 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.46■□□□□ 0.87
PCDHGA4Q9Y5G9 AC142086.2-201ENST00000569753 217 ntBASIC20.46■□□□□ 0.87
PCDHGA4Q9Y5G9 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
PCDHGA4Q9Y5G9 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.46■□□□□ 0.87
PCDHGA4Q9Y5G9 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.46■□□□□ 0.87
PCDHGA4Q9Y5G9 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
PCDHGA4Q9Y5G9 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA4Q9Y5G9 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA4Q9Y5G9 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.46■□□□□ 0.87
PCDHGA4Q9Y5G9 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
PCDHGA4Q9Y5G9 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.45■□□□□ 0.87
PCDHGA4Q9Y5G9 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.45■□□□□ 0.87
PCDHGA4Q9Y5G9 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.87
PCDHGA4Q9Y5G9 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 NIFKP4-201ENST00000567275 1192 ntBASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 MFSD11-216ENST00000590393 1141 ntBASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 AC007952.6-201ENST00000573168 2673 ntBASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 AC003957.1-201ENST00000625108 2673 ntBASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 AC026471.6-201ENST00000622954 1905 ntBASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.45■□□□□ 0.86
PCDHGA4Q9Y5G9 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA4Q9Y5G9 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
PCDHGA4Q9Y5G9 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA4Q9Y5G9 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.44■□□□□ 0.86
PCDHGA4Q9Y5G9 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA4Q9Y5G9 TSPY20P-201ENST00000450910 630 ntBASIC20.44■□□□□ 0.86
PCDHGA4Q9Y5G9 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA4Q9Y5G9 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
PCDHGA4Q9Y5G9 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA4Q9Y5G9 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.44■□□□□ 0.86
PCDHGA4Q9Y5G9 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA4Q9Y5G9 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
PCDHGA4Q9Y5G9 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.44■□□□□ 0.86
PCDHGA4Q9Y5G9 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 AL121832.2-201ENST00000610979 668 ntBASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 AC066615.1-201ENST00000640911 628 ntBASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.43■□□□□ 0.86
PCDHGA4Q9Y5G9 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.42■□□□□ 0.86
PCDHGA4Q9Y5G9 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA4Q9Y5G9 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
PCDHGA4Q9Y5G9 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA4Q9Y5G9 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.42■□□□□ 0.86
PCDHGA4Q9Y5G9 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.42■□□□□ 0.86
PCDHGA4Q9Y5G9 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA4Q9Y5G9 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA4Q9Y5G9 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms