Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
PIF1Q9H611 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PIF1Q9H611 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PIF1Q9H611 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
PIF1Q9H611 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PIF1Q9H611 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
PIF1Q9H611 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.83■□□□□ 0.77
PIF1Q9H611 AL136116.3-201ENST00000402907 1138 ntBASIC19.83■□□□□ 0.77
PIF1Q9H611 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.83■□□□□ 0.77
PIF1Q9H611 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PIF1Q9H611 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PIF1Q9H611 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
PIF1Q9H611 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PIF1Q9H611 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PIF1Q9H611 AP005212.1-201ENST00000581547 1997 ntBASIC19.83■□□□□ 0.76
PIF1Q9H611 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
PIF1Q9H611 SYT6-210ENST00000641643 1587 ntBASIC19.83■□□□□ 0.76
PIF1Q9H611 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PIF1Q9H611 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PIF1Q9H611 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PIF1Q9H611 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PIF1Q9H611 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PIF1Q9H611 AFG3L1P-217ENST00000557444 2447 ntBASIC19.82■□□□□ 0.76
PIF1Q9H611 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PIF1Q9H611 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PIF1Q9H611 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PIF1Q9H611 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.82■□□□□ 0.76
PIF1Q9H611 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.82■□□□□ 0.76
PIF1Q9H611 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.82■□□□□ 0.76
PIF1Q9H611 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
PIF1Q9H611 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PIF1Q9H611 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
PIF1Q9H611 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PIF1Q9H611 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.81■□□□□ 0.76
PIF1Q9H611 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PIF1Q9H611 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PIF1Q9H611 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PIF1Q9H611 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PIF1Q9H611 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.81■□□□□ 0.76
PIF1Q9H611 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PIF1Q9H611 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.81■□□□□ 0.76
PIF1Q9H611 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PIF1Q9H611 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PIF1Q9H611 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PIF1Q9H611 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PIF1Q9H611 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.81■□□□□ 0.76
PIF1Q9H611 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.81■□□□□ 0.76
PIF1Q9H611 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PIF1Q9H611 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
PIF1Q9H611 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PIF1Q9H611 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PIF1Q9H611 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.81■□□□□ 0.76
PIF1Q9H611 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PIF1Q9H611 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
PIF1Q9H611 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
PIF1Q9H611 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PIF1Q9H611 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.81■□□□□ 0.76
PIF1Q9H611 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.81■□□□□ 0.76
PIF1Q9H611 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PIF1Q9H611 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PIF1Q9H611 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PIF1Q9H611 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
PIF1Q9H611 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PIF1Q9H611 GABARAPL3-202ENST00000624044 1851 ntBASIC19.8■□□□□ 0.76
PIF1Q9H611 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
PIF1Q9H611 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.8■□□□□ 0.76
PIF1Q9H611 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.8■□□□□ 0.76
PIF1Q9H611 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
PIF1Q9H611 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
PIF1Q9H611 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.8■□□□□ 0.76
PIF1Q9H611 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.8■□□□□ 0.76
PIF1Q9H611 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.8■□□□□ 0.76
PIF1Q9H611 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.8■□□□□ 0.76
PIF1Q9H611 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.79■□□□□ 0.76
PIF1Q9H611 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.79■□□□□ 0.76
PIF1Q9H611 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PIF1Q9H611 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.79■□□□□ 0.76
PIF1Q9H611 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PIF1Q9H611 AP005435.1-201ENST00000529293 1178 ntBASIC19.79■□□□□ 0.76
PIF1Q9H611 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PIF1Q9H611 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PIF1Q9H611 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
PIF1Q9H611 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.79■□□□□ 0.76
PIF1Q9H611 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
PIF1Q9H611 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
PIF1Q9H611 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PIF1Q9H611 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.78■□□□□ 0.76
PIF1Q9H611 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
PIF1Q9H611 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PIF1Q9H611 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PIF1Q9H611 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.78■□□□□ 0.76
PIF1Q9H611 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PIF1Q9H611 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
PIF1Q9H611 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PIF1Q9H611 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
PIF1Q9H611 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.78■□□□□ 0.76
PIF1Q9H611 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PIF1Q9H611 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.78■□□□□ 0.76
PIF1Q9H611 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.78■□□□□ 0.76
PIF1Q9H611 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms