Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 AC066615.1-201ENST00000640911 628 ntBASIC21.72■■□□□ 1.07
EBF3Q9H4W6 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
EBF3Q9H4W6 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
EBF3Q9H4W6 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
EBF3Q9H4W6 RBM17P2-201ENST00000616397 1405 ntBASIC21.72■■□□□ 1.07
EBF3Q9H4W6 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 AC003102.1-202ENST00000563394 1796 ntBASIC21.71■■□□□ 1.07
EBF3Q9H4W6 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 BX276092.2-201ENST00000417668 665 ntBASIC21.71■■□□□ 1.07
EBF3Q9H4W6 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.71■■□□□ 1.07
EBF3Q9H4W6 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.07
EBF3Q9H4W6 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.7■■□□□ 1.06
EBF3Q9H4W6 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
EBF3Q9H4W6 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
EBF3Q9H4W6 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.7■■□□□ 1.06
EBF3Q9H4W6 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
EBF3Q9H4W6 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
EBF3Q9H4W6 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
EBF3Q9H4W6 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.7■■□□□ 1.06
EBF3Q9H4W6 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
EBF3Q9H4W6 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
EBF3Q9H4W6 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
EBF3Q9H4W6 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
EBF3Q9H4W6 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.7■■□□□ 1.06
EBF3Q9H4W6 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
EBF3Q9H4W6 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.69■■□□□ 1.06
EBF3Q9H4W6 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.69■■□□□ 1.06
EBF3Q9H4W6 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
EBF3Q9H4W6 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
EBF3Q9H4W6 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
EBF3Q9H4W6 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
EBF3Q9H4W6 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC21.69■■□□□ 1.06
EBF3Q9H4W6 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.69■■□□□ 1.06
EBF3Q9H4W6 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
EBF3Q9H4W6 AC092118.2-201ENST00000613495 667 ntBASIC21.69■■□□□ 1.06
EBF3Q9H4W6 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
EBF3Q9H4W6 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
EBF3Q9H4W6 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
EBF3Q9H4W6 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
EBF3Q9H4W6 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
EBF3Q9H4W6 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
EBF3Q9H4W6 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
EBF3Q9H4W6 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.68■■□□□ 1.06
EBF3Q9H4W6 AL591742.1-201ENST00000604433 565 ntBASIC21.68■■□□□ 1.06
EBF3Q9H4W6 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
EBF3Q9H4W6 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
EBF3Q9H4W6 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.68■■□□□ 1.06
EBF3Q9H4W6 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
EBF3Q9H4W6 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.68■■□□□ 1.06
EBF3Q9H4W6 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.68■■□□□ 1.06
EBF3Q9H4W6 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
EBF3Q9H4W6 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.67■■□□□ 1.06
EBF3Q9H4W6 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
EBF3Q9H4W6 POU5F1P3-201ENST00000428824 1078 ntBASIC21.67■■□□□ 1.06
EBF3Q9H4W6 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.67■■□□□ 1.06
EBF3Q9H4W6 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.67■■□□□ 1.06
EBF3Q9H4W6 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
EBF3Q9H4W6 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
EBF3Q9H4W6 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.67■■□□□ 1.06
EBF3Q9H4W6 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
EBF3Q9H4W6 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
EBF3Q9H4W6 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.67■■□□□ 1.06
EBF3Q9H4W6 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
EBF3Q9H4W6 AC092053.2-201ENST00000640557 1818 ntBASIC21.66■■□□□ 1.06
EBF3Q9H4W6 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
EBF3Q9H4W6 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms