Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 AC138907.5-202ENST00000569484 235 ntBASIC6.39□□□□□ -1.39
SYNE1Q8NF91 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 RBM17P2-201ENST00000616397 1405 ntBASIC6.39□□□□□ -1.39
SYNE1Q8NF91 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 CYP2T1P-201ENST00000432607 1285 ntBASIC6.39□□□□□ -1.39
SYNE1Q8NF91 AL034346.1-201ENST00000568244 1277 ntBASIC6.39□□□□□ -1.39
SYNE1Q8NF91 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SYNE1Q8NF91 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 SLC29A4P1-201ENST00000398760 971 ntBASIC6.38□□□□□ -1.39
SYNE1Q8NF91 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 C1orf229-201ENST00000623686 2258 ntBASIC6.38□□□□□ -1.39
SYNE1Q8NF91 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 MIR4497-201ENST00000583208 89 ntBASIC6.38□□□□□ -1.39
SYNE1Q8NF91 AC010536.3-201ENST00000620306 533 ntBASIC6.38□□□□□ -1.39
SYNE1Q8NF91 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 AC087742.1-201ENST00000575880 1738 ntBASIC6.38□□□□□ -1.39
SYNE1Q8NF91 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 PEX7-202ENST00000367756 680 ntTSL 3 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 FXN-202ENST00000396364 980 ntTSL 5 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 PLLP-204ENST00000569059 665 ntTSL 3 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
SYNE1Q8NF91 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
SYNE1Q8NF91 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms