Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 MIR718-201ENST00000390190 70 ntBASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 AL445228.2-201ENST00000605589 952 ntBASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 RN7SL471P-201ENST00000580476 299 ntBASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 AC105020.6-201ENST00000621523 1217 ntBASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 NARF-205ENST00000412079 1760 ntTSL 5 BASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC14.17□□□□□ -0.14
VPS13DQ5THJ4 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 MFF-205ENST00000354503 1085 ntTSL 2 BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 PBX1-209ENST00000485769 834 ntTSL 2 BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 AC010331.1-201ENST00000611423 582 ntBASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13DQ5THJ4 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC14.15□□□□□ -0.14
VPS13DQ5THJ4 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13DQ5THJ4 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13DQ5THJ4 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13DQ5THJ4 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13DQ5THJ4 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
VPS13DQ5THJ4 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13DQ5THJ4 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC14.15□□□□□ -0.14
VPS13DQ5THJ4 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
VPS13DQ5THJ4 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13DQ5THJ4 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC14.15□□□□□ -0.14
VPS13DQ5THJ4 AC012618.2-201ENST00000428058 849 ntBASIC14.15□□□□□ -0.14
VPS13DQ5THJ4 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13DQ5THJ4 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC14.15□□□□□ -0.14
VPS13DQ5THJ4 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13DQ5THJ4 AC092368.3-202ENST00000574180 1591 ntBASIC14.15□□□□□ -0.14
VPS13DQ5THJ4 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 SPIB-206ENST00000596074 847 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
VPS13DQ5THJ4 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC14.13□□□□□ -0.15
VPS13DQ5THJ4 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13DQ5THJ4 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC14.13□□□□□ -0.15
VPS13DQ5THJ4 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC14.13□□□□□ -0.15
VPS13DQ5THJ4 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13DQ5THJ4 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13DQ5THJ4 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
VPS13DQ5THJ4 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms