Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 RRT16YNL105W 429 nt3.17□□□□□ -1.9
UPF3P48412 CUR1YPR158W 759 nt3.17□□□□□ -1.9
UPF3P48412 ADF1YCL058W-A 342 nt3.17□□□□□ -1.9
UPF3P48412 MAK21YDR060W 3078 nt3.17□□□□□ -1.9
UPF3P48412 STI1YOR027W 1770 nt3.17□□□□□ -1.9
UPF3P48412 VTC4YJL012C 2166 nt3.17□□□□□ -1.9
UPF3P48412 SPO14YKR031C 5052 nt3.17□□□□□ -1.9
UPF3P48412 GIS4YML006C 2325 nt3.16□□□□□ -1.9
UPF3P48412 FAA2YER015W 2235 nt3.16□□□□□ -1.9
UPF3P48412 YDL180WYDL180W 1644 nt3.16□□□□□ -1.9
UPF3P48412 STE6YKL209C 3873 nt3.16□□□□□ -1.9
UPF3P48412 APC11YDL008W 498 nt3.16□□□□□ -1.9
UPF3P48412 YGR017WYGR017W 894 nt3.16□□□□□ -1.9
UPF3P48412 RPL23AYBL087C 414 nt3.16□□□□□ -1.9
UPF3P48412 SEC66YBR171W 621 nt3.16□□□□□ -1.9
UPF3P48412 YCL007CYCL007C 393 nt3.16□□□□□ -1.9
UPF3P48412 TGL3YMR313C 1929 nt3.16□□□□□ -1.9
UPF3P48412 TAF2YCR042C 4224 nt3.16□□□□□ -1.9
UPF3P48412 VAS1YGR094W 3315 nt3.16□□□□□ -1.9
UPF3P48412 YJL132WYJL132W 2253 nt3.16□□□□□ -1.9
UPF3P48412 AIM19YIL087C 474 nt3.15□□□□□ -1.91
UPF3P48412 ECI1YLR284C 843 nt3.15□□□□□ -1.91
UPF3P48412 YRO2YBR054W 1035 nt3.15□□□□□ -1.91
UPF3P48412 YBR062CYBR062C 543 nt3.15□□□□□ -1.91
UPF3P48412 DSE4YNR067C 3354 nt3.15□□□□□ -1.91
UPF3P48412 ARP4YJL081C 1470 nt3.15□□□□□ -1.91
UPF3P48412 SPO71YDR104C 3738 nt3.15□□□□□ -1.91
UPF3P48412 TCP1YDR212W 1680 nt3.14□□□□□ -1.91
UPF3P48412 MAL33YBR297W 1407 nt3.14□□□□□ -1.91
UPF3P48412 PBP4YDL053C 558 nt3.14□□□□□ -1.91
UPF3P48412 RPS16AYMR143W 432 nt3.14□□□□□ -1.91
UPF3P48412 IMP4YNL075W 873 nt3.14□□□□□ -1.91
UPF3P48412 snR189snR189 189 nt3.14□□□□□ -1.91
UPF3P48412 YEL1YBL060W 2064 nt3.14□□□□□ -1.91
UPF3P48412 SHS1YDL225W 1656 nt3.14□□□□□ -1.91
UPF3P48412 PCK1YKR097W 1650 nt3.14□□□□□ -1.91
UPF3P48412 VMA8YEL051W 771 nt3.13□□□□□ -1.91
UPF3P48412 RPL30YGL030W 318 nt3.13□□□□□ -1.91
UPF3P48412 YIP1YGR172C 747 nt3.13□□□□□ -1.91
UPF3P48412 YHR050W-AYHR050W-A 171 nt3.13□□□□□ -1.91
UPF3P48412 RPL17AYKL180W 555 nt3.13□□□□□ -1.91
UPF3P48412 YPL107WYPL107W 747 nt3.13□□□□□ -1.91
UPF3P48412 YBR063CYBR063C 1215 nt3.13□□□□□ -1.91
UPF3P48412 YLR108CYLR108C 1458 nt3.13□□□□□ -1.91
UPF3P48412 DBF20YPR111W 1695 nt3.13□□□□□ -1.91
UPF3P48412 BMS1YPL217C 3552 nt3.13□□□□□ -1.91
UPF3P48412 FAR1YJL157C 2493 nt3.13□□□□□ -1.91
UPF3P48412 KAR9YPL269W 1935 nt3.13□□□□□ -1.91
UPF3P48412 RPN1YHR027C 2982 nt3.12□□□□□ -1.91
UPF3P48412 SNA4YDL123W 423 nt3.12□□□□□ -1.91
UPF3P48412 DAD1YDR016C 285 nt3.12□□□□□ -1.91
UPF3P48412 YDR042CYDR042C 603 nt3.12□□□□□ -1.91
UPF3P48412 TCD1YHR003C 1290 nt3.12□□□□□ -1.91
UPF3P48412 YOL107WYOL107W 1029 nt3.12□□□□□ -1.91
UPF3P48412 HUT1YPL244C 1020 nt3.12□□□□□ -1.91
UPF3P48412 YCT1YLL055W 1596 nt3.12□□□□□ -1.91
UPF3P48412 BUD4YJR092W 4344 nt3.12□□□□□ -1.91
UPF3P48412 ESC2YDR363W 1371 nt3.12□□□□□ -1.91
UPF3P48412 MET6YER091C 2304 nt3.11□□□□□ -1.91
UPF3P48412 TMA64YDR117C 1698 nt3.11□□□□□ -1.91
UPF3P48412 DNM1YLL001W 2274 nt3.11□□□□□ -1.91
UPF3P48412 YFR009W-AYFR009W-A 258 nt3.11□□□□□ -1.91
UPF3P48412 RPL17BYJL177W 555 nt3.11□□□□□ -1.91
UPF3P48412 YET1YKL065C 621 nt3.11□□□□□ -1.91
UPF3P48412 YNL013CYNL013C 378 nt3.11□□□□□ -1.91
UPF3P48412 PSY2YNL201C 2577 nt3.11□□□□□ -1.91
UPF3P48412 DOA4YDR069C 2781 nt3.11□□□□□ -1.91
UPF3P48412 MES1YGR264C 2256 nt3.1□□□□□ -1.91
UPF3P48412 ALY1YKR021W 2748 nt3.1□□□□□ -1.91
UPF3P48412 OPI6YDL096C 327 nt3.1□□□□□ -1.91
UPF3P48412 YER107W-AYER107W-A 321 nt3.1□□□□□ -1.91
UPF3P48412 YGR109W-AYGR109W-A 873 nt3.1□□□□□ -1.91
UPF3P48412 YIL082WYIL082W 873 nt3.1□□□□□ -1.91
UPF3P48412 CPR7YJR032W 1182 nt3.1□□□□□ -1.91
UPF3P48412 YKL123WYKL123W 381 nt3.1□□□□□ -1.91
UPF3P48412 YBL065WYBL065W 345 nt3.1□□□□□ -1.91
UPF3P48412 GIM3YNL153C 390 nt3.1□□□□□ -1.91
UPF3P48412 SFM1YOR021C 642 nt3.1□□□□□ -1.91
UPF3P48412 HEM4YOR278W 828 nt3.1□□□□□ -1.91
UPF3P48412 SSP1YHR184W 1716 nt3.1□□□□□ -1.91
UPF3P48412 SEN54YPL083C 1404 nt3.1□□□□□ -1.91
UPF3P48412 CDC55YGL190C 1581 nt3.09□□□□□ -1.91
UPF3P48412 POM152YMR129W 4014 nt3.09□□□□□ -1.91
UPF3P48412 REF2YDR195W 1602 nt3.09□□□□□ -1.91
UPF3P48412 tK(UUU)DtK(UUU)D 73 nt3.09□□□□□ -1.91
UPF3P48412 tK(UUU)G1tK(UUU)G1 73 nt3.09□□□□□ -1.91
UPF3P48412 tK(UUU)G2tK(UUU)G2 73 nt3.09□□□□□ -1.91
UPF3P48412 tK(UUU)KtK(UUU)K 73 nt3.09□□□□□ -1.91
UPF3P48412 tK(UUU)LtK(UUU)L 73 nt3.09□□□□□ -1.91
UPF3P48412 tK(UUU)OtK(UUU)O 73 nt3.09□□□□□ -1.91
UPF3P48412 tK(UUU)PtK(UUU)P 73 nt3.09□□□□□ -1.91
UPF3P48412 YIL012WYIL012W 342 nt3.09□□□□□ -1.91
UPF3P48412 YIR036W-AYIR036W-A 402 nt3.09□□□□□ -1.91
UPF3P48412 YJL147CYJL147C 1149 nt3.09□□□□□ -1.91
UPF3P48412 ASG7YJL170C 630 nt3.09□□□□□ -1.91
UPF3P48412 YMR122W-AYMR122W-A 255 nt3.09□□□□□ -1.91
UPF3P48412 YBL039W-BYBL039W-B 180 nt3.09□□□□□ -1.91
UPF3P48412 INP1YMR204C 1263 nt3.09□□□□□ -1.91
UPF3P48412 RHO5YNL180C 996 nt3.09□□□□□ -1.91
UPF3P48412 YOR152CYOR152C 771 nt3.09□□□□□ -1.91
Retrieved 100 of 7,029 protein–RNA pairs in 27.4 ms