Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDH3P22223 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDH3P22223 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.36■□□□□ 0.85
CDH3P22223 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.36■□□□□ 0.85
CDH3P22223 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.36■□□□□ 0.85
CDH3P22223 MFSD11-216ENST00000590393 1141 ntBASIC20.36■□□□□ 0.85
CDH3P22223 AC008175.2-201ENST00000612840 297 ntBASIC20.36■□□□□ 0.85
CDH3P22223 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.36■□□□□ 0.85
CDH3P22223 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDH3P22223 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDH3P22223 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDH3P22223 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH3P22223 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
CDH3P22223 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH3P22223 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CDH3P22223 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH3P22223 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.35■□□□□ 0.85
CDH3P22223 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.35■□□□□ 0.85
CDH3P22223 CDCA4P2-201ENST00000441182 718 ntBASIC20.35■□□□□ 0.85
CDH3P22223 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.35■□□□□ 0.85
CDH3P22223 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.35■□□□□ 0.85
CDH3P22223 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CDH3P22223 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH3P22223 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDH3P22223 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.35■□□□□ 0.85
CDH3P22223 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CDH3P22223 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CDH3P22223 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH3P22223 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH3P22223 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH3P22223 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH3P22223 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH3P22223 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH3P22223 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDH3P22223 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.34■□□□□ 0.85
CDH3P22223 AC026185.1-201ENST00000445748 174 ntBASIC20.34■□□□□ 0.85
CDH3P22223 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.34■□□□□ 0.85
CDH3P22223 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CDH3P22223 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH3P22223 AC120498.10-201ENST00000621827 505 ntBASIC20.34■□□□□ 0.85
CDH3P22223 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH3P22223 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH3P22223 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.34■□□□□ 0.85
CDH3P22223 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH3P22223 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CDH3P22223 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.34■□□□□ 0.85
CDH3P22223 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CDH3P22223 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH3P22223 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CDH3P22223 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.34■□□□□ 0.85
CDH3P22223 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CDH3P22223 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CDH3P22223 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.33■□□□□ 0.85
CDH3P22223 AC026471.6-201ENST00000622954 1905 ntBASIC20.33■□□□□ 0.85
CDH3P22223 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDH3P22223 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDH3P22223 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
CDH3P22223 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
CDH3P22223 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDH3P22223 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDH3P22223 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CDH3P22223 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.33■□□□□ 0.85
CDH3P22223 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.33■□□□□ 0.85
CDH3P22223 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.33■□□□□ 0.85
CDH3P22223 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.33■□□□□ 0.85
CDH3P22223 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.33■□□□□ 0.85
CDH3P22223 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CDH3P22223 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CDH3P22223 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH3P22223 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH3P22223 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CDH3P22223 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CDH3P22223 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH3P22223 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH3P22223 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH3P22223 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.32■□□□□ 0.84
CDH3P22223 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.32■□□□□ 0.84
CDH3P22223 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH3P22223 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.32■□□□□ 0.84
CDH3P22223 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CDH3P22223 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.32■□□□□ 0.84
CDH3P22223 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.32■□□□□ 0.84
CDH3P22223 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CDH3P22223 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH3P22223 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CDH3P22223 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.32■□□□□ 0.84
CDH3P22223 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH3P22223 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDH3P22223 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH3P22223 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDH3P22223 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH3P22223 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.31■□□□□ 0.84
CDH3P22223 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH3P22223 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.31■□□□□ 0.84
CDH3P22223 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
CDH3P22223 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.31■□□□□ 0.84
CDH3P22223 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH3P22223 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.31■□□□□ 0.84
CDH3P22223 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.31■□□□□ 0.84
CDH3P22223 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms