Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SIX3O95343 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SIX3O95343 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SIX3O95343 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SIX3O95343 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SIX3O95343 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.37■□□□□ 0.85
SIX3O95343 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.37■□□□□ 0.85
SIX3O95343 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.37■□□□□ 0.85
SIX3O95343 EEF1DP3-203ENST00000566025 782 ntBASIC20.37■□□□□ 0.85
SIX3O95343 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.37■□□□□ 0.85
SIX3O95343 AL354811.1-201ENST00000610286 706 ntBASIC20.37■□□□□ 0.85
SIX3O95343 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SIX3O95343 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
SIX3O95343 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SIX3O95343 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SIX3O95343 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SIX3O95343 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SIX3O95343 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
SIX3O95343 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
SIX3O95343 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
SIX3O95343 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SIX3O95343 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.36■□□□□ 0.85
SIX3O95343 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.36■□□□□ 0.85
SIX3O95343 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
SIX3O95343 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
SIX3O95343 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.36■□□□□ 0.85
SIX3O95343 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SIX3O95343 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SIX3O95343 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.36■□□□□ 0.85
SIX3O95343 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SIX3O95343 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SIX3O95343 AC121338.2-201ENST00000622535 1744 ntBASIC20.36■□□□□ 0.85
SIX3O95343 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
SIX3O95343 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SIX3O95343 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SIX3O95343 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX3O95343 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX3O95343 AC061975.6-201ENST00000579045 1553 ntBASIC20.35■□□□□ 0.85
SIX3O95343 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.35■□□□□ 0.85
SIX3O95343 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.35■□□□□ 0.85
SIX3O95343 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.35■□□□□ 0.85
SIX3O95343 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX3O95343 AC053503.5-201ENST00000601508 636 ntBASIC20.35■□□□□ 0.85
SIX3O95343 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SIX3O95343 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SIX3O95343 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SIX3O95343 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SIX3O95343 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX3O95343 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.35■□□□□ 0.85
SIX3O95343 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX3O95343 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX3O95343 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX3O95343 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SIX3O95343 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.34■□□□□ 0.85
SIX3O95343 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SIX3O95343 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.34■□□□□ 0.85
SIX3O95343 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SIX3O95343 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.34■□□□□ 0.85
SIX3O95343 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SIX3O95343 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SIX3O95343 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.34■□□□□ 0.85
SIX3O95343 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SIX3O95343 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SIX3O95343 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SIX3O95343 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.34■□□□□ 0.85
SIX3O95343 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
SIX3O95343 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SIX3O95343 AC073314.1-201ENST00000568729 2216 ntBASIC20.34■□□□□ 0.85
SIX3O95343 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SIX3O95343 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SIX3O95343 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SIX3O95343 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SIX3O95343 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.34■□□□□ 0.85
SIX3O95343 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.33■□□□□ 0.85
SIX3O95343 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SIX3O95343 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SIX3O95343 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SIX3O95343 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
SIX3O95343 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SIX3O95343 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SIX3O95343 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SIX3O95343 AL358852.1-201ENST00000623174 1268 ntBASIC20.33■□□□□ 0.85
SIX3O95343 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
SIX3O95343 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
SIX3O95343 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SIX3O95343 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
SIX3O95343 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.32■□□□□ 0.84
SIX3O95343 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.32■□□□□ 0.84
SIX3O95343 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
SIX3O95343 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX3O95343 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
SIX3O95343 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
SIX3O95343 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms