Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
VPS9D1Q9Y2B5 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS9D1Q9Y2B5 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.74■□□□□ 0.91
VPS9D1Q9Y2B5 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.74■□□□□ 0.91
VPS9D1Q9Y2B5 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.74■□□□□ 0.91
VPS9D1Q9Y2B5 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VPS9D1Q9Y2B5 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS9D1Q9Y2B5 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.74■□□□□ 0.91
VPS9D1Q9Y2B5 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS9D1Q9Y2B5 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS9D1Q9Y2B5 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS9D1Q9Y2B5 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS9D1Q9Y2B5 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
VPS9D1Q9Y2B5 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 KRT16P2-201ENST00000414673 1423 ntBASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 ZNRF2P3-201ENST00000424200 374 ntBASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS9D1Q9Y2B5 AC061975.6-201ENST00000579045 1553 ntBASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 AC010141.2-201ENST00000452426 721 ntBASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 DUX4L2-201ENST00000561772 1275 ntBASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 DUX4L6-201ENST00000626483 1275 ntBASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 DUX4L1-201ENST00000627662 1275 ntBASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 DUX4L8-201ENST00000629013 1275 ntBASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 DUX4L3-201ENST00000630187 1275 ntBASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 DUX4L7-201ENST00000630678 1275 ntBASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 DUX4L5-201ENST00000630834 1275 ntBASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS9D1Q9Y2B5 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS9D1Q9Y2B5 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS9D1Q9Y2B5 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.71■□□□□ 0.91
VPS9D1Q9Y2B5 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
VPS9D1Q9Y2B5 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS9D1Q9Y2B5 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.71■□□□□ 0.91
VPS9D1Q9Y2B5 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
VPS9D1Q9Y2B5 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS9D1Q9Y2B5 KRT18P14-201ENST00000534205 1250 ntBASIC20.71■□□□□ 0.91
VPS9D1Q9Y2B5 CCDC92B-201ENST00000575506 885 ntBASIC20.71■□□□□ 0.91
VPS9D1Q9Y2B5 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.71■□□□□ 0.91
VPS9D1Q9Y2B5 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS9D1Q9Y2B5 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS9D1Q9Y2B5 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
VPS9D1Q9Y2B5 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
VPS9D1Q9Y2B5 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.7■□□□□ 0.91
VPS9D1Q9Y2B5 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.7■□□□□ 0.9
VPS9D1Q9Y2B5 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS9D1Q9Y2B5 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS9D1Q9Y2B5 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.7■□□□□ 0.9
VPS9D1Q9Y2B5 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS9D1Q9Y2B5 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS9D1Q9Y2B5 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS9D1Q9Y2B5 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.7■□□□□ 0.9
VPS9D1Q9Y2B5 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
VPS9D1Q9Y2B5 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS9D1Q9Y2B5 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS9D1Q9Y2B5 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.7■□□□□ 0.9
VPS9D1Q9Y2B5 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS9D1Q9Y2B5 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
VPS9D1Q9Y2B5 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS9D1Q9Y2B5 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS9D1Q9Y2B5 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS9D1Q9Y2B5 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS9D1Q9Y2B5 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS9D1Q9Y2B5 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS9D1Q9Y2B5 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS9D1Q9Y2B5 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS9D1Q9Y2B5 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS9D1Q9Y2B5 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS9D1Q9Y2B5 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms