Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 CYP2T3P-201ENST00000601990 817 ntBASIC21.74■■□□□ 1.07
NPAS3Q8IXF0 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NPAS3Q8IXF0 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.74■■□□□ 1.07
NPAS3Q8IXF0 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NPAS3Q8IXF0 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.74■■□□□ 1.07
NPAS3Q8IXF0 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 AC133561.1-201ENST00000568600 2415 ntBASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 AC100791.3-201ENST00000617619 330 ntBASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 AC068473.5-201ENST00000616428 2072 ntBASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.73■■□□□ 1.07
NPAS3Q8IXF0 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NPAS3Q8IXF0 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.72■■□□□ 1.07
NPAS3Q8IXF0 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.72■■□□□ 1.07
NPAS3Q8IXF0 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPAS3Q8IXF0 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.72■■□□□ 1.07
NPAS3Q8IXF0 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.72■■□□□ 1.07
NPAS3Q8IXF0 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.72■■□□□ 1.07
NPAS3Q8IXF0 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.72■■□□□ 1.07
NPAS3Q8IXF0 CDV3P1-201ENST00000471403 739 ntBASIC21.72■■□□□ 1.07
NPAS3Q8IXF0 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.72■■□□□ 1.07
NPAS3Q8IXF0 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.72■■□□□ 1.07
NPAS3Q8IXF0 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.72■■□□□ 1.07
NPAS3Q8IXF0 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
NPAS3Q8IXF0 AC012676.1-201ENST00000574705 1949 ntBASIC21.72■■□□□ 1.07
NPAS3Q8IXF0 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPAS3Q8IXF0 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPAS3Q8IXF0 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPAS3Q8IXF0 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
NPAS3Q8IXF0 AC026471.6-201ENST00000622954 1905 ntBASIC21.71■■□□□ 1.07
NPAS3Q8IXF0 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NPAS3Q8IXF0 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPAS3Q8IXF0 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NPAS3Q8IXF0 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.71■■□□□ 1.07
NPAS3Q8IXF0 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NPAS3Q8IXF0 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.71■■□□□ 1.07
NPAS3Q8IXF0 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.71■■□□□ 1.07
NPAS3Q8IXF0 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
NPAS3Q8IXF0 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
NPAS3Q8IXF0 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.07
NPAS3Q8IXF0 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPAS3Q8IXF0 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NPAS3Q8IXF0 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPAS3Q8IXF0 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.7■■□□□ 1.06
NPAS3Q8IXF0 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.7■■□□□ 1.06
NPAS3Q8IXF0 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.7■■□□□ 1.06
NPAS3Q8IXF0 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPAS3Q8IXF0 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
NPAS3Q8IXF0 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NPAS3Q8IXF0 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPAS3Q8IXF0 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
NPAS3Q8IXF0 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.69■■□□□ 1.06
NPAS3Q8IXF0 C11orf96-202ENST00000528572 1834 ntBASIC21.69■■□□□ 1.06
NPAS3Q8IXF0 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPAS3Q8IXF0 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
NPAS3Q8IXF0 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.69■■□□□ 1.06
NPAS3Q8IXF0 AL596275.1-201ENST00000423464 877 ntBASIC21.69■■□□□ 1.06
NPAS3Q8IXF0 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21.69■■□□□ 1.06
NPAS3Q8IXF0 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPAS3Q8IXF0 AC060766.5-201ENST00000590539 871 ntBASIC21.69■■□□□ 1.06
NPAS3Q8IXF0 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.69■■□□□ 1.06
NPAS3Q8IXF0 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.69■■□□□ 1.06
NPAS3Q8IXF0 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPAS3Q8IXF0 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPAS3Q8IXF0 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPAS3Q8IXF0 RPS2P4-201ENST00000476944 856 ntBASIC21.68■■□□□ 1.06
NPAS3Q8IXF0 UNC93B4-201ENST00000505679 747 ntBASIC21.68■■□□□ 1.06
NPAS3Q8IXF0 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.68■■□□□ 1.06
NPAS3Q8IXF0 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPAS3Q8IXF0 AC008403.3-201ENST00000598924 454 ntBASIC21.68■■□□□ 1.06
NPAS3Q8IXF0 HLA-B-256ENST00000639848 1089 ntBASIC21.68■■□□□ 1.06
NPAS3Q8IXF0 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPAS3Q8IXF0 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPAS3Q8IXF0 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPAS3Q8IXF0 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPAS3Q8IXF0 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPAS3Q8IXF0 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.68■■□□□ 1.06
NPAS3Q8IXF0 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPAS3Q8IXF0 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPAS3Q8IXF0 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
NPAS3Q8IXF0 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPAS3Q8IXF0 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
NPAS3Q8IXF0 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPAS3Q8IXF0 AC080038.3-201ENST00000623346 1952 ntBASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms