Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CX3CL1P78423 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CX3CL1P78423 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC16.79■□□□□ 0.28
CX3CL1P78423 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CX3CL1P78423 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CX3CL1P78423 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC16.79■□□□□ 0.28
CX3CL1P78423 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC16.79■□□□□ 0.28
CX3CL1P78423 TERF1P2-201ENST00000583350 1212 ntBASIC16.79■□□□□ 0.28
CX3CL1P78423 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC16.79■□□□□ 0.28
CX3CL1P78423 RAB43-208ENST00000615093 783 ntTSL 5 BASIC16.79■□□□□ 0.28
CX3CL1P78423 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC16.79■□□□□ 0.28
CX3CL1P78423 MFF-207ENST00000409565 1548 ntTSL 2 BASIC16.79■□□□□ 0.28
CX3CL1P78423 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CX3CL1P78423 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CX3CL1P78423 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CX3CL1P78423 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CX3CL1P78423 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CX3CL1P78423 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC16.79■□□□□ 0.28
CX3CL1P78423 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CX3CL1P78423 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC16.78■□□□□ 0.28
CX3CL1P78423 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CX3CL1P78423 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CX3CL1P78423 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CX3CL1P78423 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC16.78■□□□□ 0.28
CX3CL1P78423 CCDC92B-201ENST00000575506 885 ntBASIC16.78■□□□□ 0.28
CX3CL1P78423 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
CX3CL1P78423 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC16.78■□□□□ 0.28
CX3CL1P78423 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CX3CL1P78423 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CX3CL1P78423 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CX3CL1P78423 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CX3CL1P78423 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CX3CL1P78423 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CX3CL1P78423 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CX3CL1P78423 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
CX3CL1P78423 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
CX3CL1P78423 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CL1P78423 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CL1P78423 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
CX3CL1P78423 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC16.77■□□□□ 0.28
CX3CL1P78423 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CL1P78423 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CL1P78423 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CL1P78423 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CL1P78423 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CL1P78423 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CL1P78423 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CL1P78423 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CL1P78423 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC16.77■□□□□ 0.28
CX3CL1P78423 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CX3CL1P78423 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CX3CL1P78423 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC16.77■□□□□ 0.27
CX3CL1P78423 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
CX3CL1P78423 Z98882.1-201ENST00000622160 2253 ntBASIC16.77■□□□□ 0.27
CX3CL1P78423 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CX3CL1P78423 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CX3CL1P78423 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
CX3CL1P78423 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CX3CL1P78423 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC16.77■□□□□ 0.27
CX3CL1P78423 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CX3CL1P78423 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CL1P78423 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CL1P78423 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CL1P78423 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CL1P78423 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC16.76■□□□□ 0.27
CX3CL1P78423 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CL1P78423 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CX3CL1P78423 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CL1P78423 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CX3CL1P78423 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CL1P78423 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC16.76■□□□□ 0.27
CX3CL1P78423 KRT18P14-201ENST00000534205 1250 ntBASIC16.76■□□□□ 0.27
CX3CL1P78423 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CL1P78423 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CX3CL1P78423 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CL1P78423 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CL1P78423 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CL1P78423 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CL1P78423 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC16.76■□□□□ 0.27
CX3CL1P78423 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CL1P78423 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC16.76■□□□□ 0.27
CX3CL1P78423 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC16.76■□□□□ 0.27
CX3CL1P78423 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CL1P78423 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CL1P78423 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CL1P78423 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CX3CL1P78423 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CL1P78423 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CL1P78423 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CL1P78423 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CL1P78423 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CL1P78423 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CL1P78423 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CL1P78423 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CL1P78423 KRT87P-202ENST00000534226 1464 ntBASIC16.75■□□□□ 0.27
CX3CL1P78423 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CL1P78423 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CX3CL1P78423 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CL1P78423 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CL1P78423 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms