Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CRK-204ENST00000574295 1391 ntTSL 5 BASIC29.27■■■□□ 2.28
MSH6P52701 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC29.27■■■□□ 2.28
MSH6P52701 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC29.27■■■□□ 2.28
MSH6P52701 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC29.27■■■□□ 2.28
MSH6P52701 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC29.27■■■□□ 2.28
MSH6P52701 SERF2-207ENST00000409614 582 ntTSL 2 BASIC29.26■■■□□ 2.28
MSH6P52701 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC29.26■■■□□ 2.28
MSH6P52701 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC29.26■■■□□ 2.28
MSH6P52701 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC29.26■■■□□ 2.28
MSH6P52701 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC29.26■■■□□ 2.28
MSH6P52701 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC29.26■■■□□ 2.28
MSH6P52701 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC29.26■■■□□ 2.28
MSH6P52701 AC124016.1-201ENST00000609552 612 ntBASIC29.26■■■□□ 2.28
MSH6P52701 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC29.26■■■□□ 2.28
MSH6P52701 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC29.26■■■□□ 2.27
MSH6P52701 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
MSH6P52701 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC29.26■■■□□ 2.27
MSH6P52701 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC29.26■■■□□ 2.27
MSH6P52701 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
MSH6P52701 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
MSH6P52701 AC133681.1-201ENST00000465482 601 ntBASIC29.26■■■□□ 2.27
MSH6P52701 AL355075.4-201ENST00000554988 638 ntBASIC29.26■■■□□ 2.27
MSH6P52701 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
MSH6P52701 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
MSH6P52701 RN7SL850P-201ENST00000579959 291 ntBASIC29.26■■■□□ 2.27
MSH6P52701 NT5C-211ENST00000582170 653 ntTSL 3 BASIC29.26■■■□□ 2.27
MSH6P52701 ABCB10P4-201ENST00000566803 2184 ntBASIC29.26■■■□□ 2.27
MSH6P52701 AL135905.2-201ENST00000584934 1404 ntBASIC29.25■■■□□ 2.27
MSH6P52701 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
MSH6P52701 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
MSH6P52701 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC29.25■■■□□ 2.27
MSH6P52701 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
MSH6P52701 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC29.25■■■□□ 2.27
MSH6P52701 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC29.25■■■□□ 2.27
MSH6P52701 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC29.25■■■□□ 2.27
MSH6P52701 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC29.25■■■□□ 2.27
MSH6P52701 AC113410.3-201ENST00000623366 203 ntBASIC29.25■■■□□ 2.27
MSH6P52701 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
MSH6P52701 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
MSH6P52701 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC29.24■■■□□ 2.27
MSH6P52701 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
MSH6P52701 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
MSH6P52701 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC29.24■■■□□ 2.27
MSH6P52701 LY6E-205ENST00000519611 635 ntTSL 3 BASIC29.24■■■□□ 2.27
MSH6P52701 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC29.24■■■□□ 2.27
MSH6P52701 TK2-204ENST00000525974 1178 ntTSL 2 BASIC29.24■■■□□ 2.27
MSH6P52701 MTDHP1-201ENST00000605323 784 ntBASIC29.24■■■□□ 2.27
MSH6P52701 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
MSH6P52701 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC29.24■■■□□ 2.27
MSH6P52701 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
MSH6P52701 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC29.23■■■□□ 2.27
MSH6P52701 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
MSH6P52701 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
MSH6P52701 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC29.23■■■□□ 2.27
MSH6P52701 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
MSH6P52701 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC29.23■■■□□ 2.27
MSH6P52701 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
MSH6P52701 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC29.22■■■□□ 2.27
MSH6P52701 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
MSH6P52701 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
MSH6P52701 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC29.22■■■□□ 2.27
MSH6P52701 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
MSH6P52701 KRT18P68-201ENST00000392293 1000 ntBASIC29.22■■■□□ 2.27
MSH6P52701 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC29.22■■■□□ 2.27
MSH6P52701 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC29.22■■■□□ 2.27
MSH6P52701 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
MSH6P52701 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
MSH6P52701 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
MSH6P52701 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
MSH6P52701 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
MSH6P52701 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
MSH6P52701 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC29.21■■■□□ 2.27
MSH6P52701 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC29.21■■■□□ 2.27
MSH6P52701 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC29.21■■■□□ 2.27
MSH6P52701 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
MSH6P52701 GCK-205ENST00000437084 1385 ntTSL 5 BASIC29.2■■■□□ 2.26
MSH6P52701 AC239809.2-201ENST00000415381 517 ntBASIC29.2■■■□□ 2.26
MSH6P52701 HES2-205ENST00000487437 968 ntTSL 3 BASIC29.2■■■□□ 2.26
MSH6P52701 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
MSH6P52701 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC29.2■■■□□ 2.26
MSH6P52701 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
MSH6P52701 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC29.2■■■□□ 2.26
MSH6P52701 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
MSH6P52701 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
MSH6P52701 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC29.19■■■□□ 2.26
MSH6P52701 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
MSH6P52701 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC29.19■■■□□ 2.26
MSH6P52701 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
MSH6P52701 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC29.19■■■□□ 2.26
MSH6P52701 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
MSH6P52701 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
MSH6P52701 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
MSH6P52701 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
MSH6P52701 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC29.19■■■□□ 2.26
MSH6P52701 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC29.18■■■□□ 2.26
MSH6P52701 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
MSH6P52701 ARMC10P1-201ENST00000313754 855 ntBASIC29.18■■■□□ 2.26
MSH6P52701 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
MSH6P52701 AL023875.1-201ENST00000640777 796 ntBASIC29.18■■■□□ 2.26
MSH6P52701 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms