Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 CYP2T3P-201ENST00000601990 817 ntBASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 KRT17P1-201ENST00000399211 1546 ntBASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHGA1Q9Y5H4 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PCDHGA1Q9Y5H4 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHGA1Q9Y5H4 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
PCDHGA1Q9Y5H4 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHGA1Q9Y5H4 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.2■□□□□ 0.82
PCDHGA1Q9Y5H4 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.2■□□□□ 0.82
PCDHGA1Q9Y5H4 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHGA1Q9Y5H4 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
PCDHGA1Q9Y5H4 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
PCDHGA1Q9Y5H4 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHGA1Q9Y5H4 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
PCDHGA1Q9Y5H4 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHGA1Q9Y5H4 AC137767.1-201ENST00000602918 1920 ntBASIC20.19■□□□□ 0.82
PCDHGA1Q9Y5H4 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.19■□□□□ 0.82
PCDHGA1Q9Y5H4 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHGA1Q9Y5H4 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDHGA1Q9Y5H4 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHGA1Q9Y5H4 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
PCDHGA1Q9Y5H4 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.19■□□□□ 0.82
PCDHGA1Q9Y5H4 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.19■□□□□ 0.82
PCDHGA1Q9Y5H4 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.19■□□□□ 0.82
PCDHGA1Q9Y5H4 AL589743.5-201ENST00000616611 1050 ntBASIC20.19■□□□□ 0.82
PCDHGA1Q9Y5H4 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHGA1Q9Y5H4 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHGA1Q9Y5H4 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDHGA1Q9Y5H4 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHGA1Q9Y5H4 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHGA1Q9Y5H4 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDHGA1Q9Y5H4 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDHGA1Q9Y5H4 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA1Q9Y5H4 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA1Q9Y5H4 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA1Q9Y5H4 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA1Q9Y5H4 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA1Q9Y5H4 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA1Q9Y5H4 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
PCDHGA1Q9Y5H4 KRT17P3-201ENST00000420566 1262 ntBASIC20.18■□□□□ 0.82
PCDHGA1Q9Y5H4 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA1Q9Y5H4 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA1Q9Y5H4 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA1Q9Y5H4 FAM197Y4-202ENST00000622692 608 ntBASIC20.18■□□□□ 0.82
PCDHGA1Q9Y5H4 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA1Q9Y5H4 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.18■□□□□ 0.82
PCDHGA1Q9Y5H4 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.18■□□□□ 0.82
PCDHGA1Q9Y5H4 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA1Q9Y5H4 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHGA1Q9Y5H4 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHGA1Q9Y5H4 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHGA1Q9Y5H4 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHGA1Q9Y5H4 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.17■□□□□ 0.82
PCDHGA1Q9Y5H4 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHGA1Q9Y5H4 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHGA1Q9Y5H4 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHGA1Q9Y5H4 AC091799.1-201ENST00000422823 811 ntBASIC20.17■□□□□ 0.82
PCDHGA1Q9Y5H4 AL355472.2-201ENST00000422958 438 ntBASIC20.17■□□□□ 0.82
PCDHGA1Q9Y5H4 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDHGA1Q9Y5H4 RPPH1-201ENST00000516869 333 ntBASIC20.17■□□□□ 0.82
PCDHGA1Q9Y5H4 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.17■□□□□ 0.82
PCDHGA1Q9Y5H4 MIR4497-201ENST00000583208 89 ntBASIC20.17■□□□□ 0.82
PCDHGA1Q9Y5H4 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.17■□□□□ 0.82
PCDHGA1Q9Y5H4 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA1Q9Y5H4 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA1Q9Y5H4 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA1Q9Y5H4 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.16■□□□□ 0.82
PCDHGA1Q9Y5H4 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
PCDHGA1Q9Y5H4 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA1Q9Y5H4 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.16■□□□□ 0.82
PCDHGA1Q9Y5H4 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.16■□□□□ 0.82
PCDHGA1Q9Y5H4 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.16■□□□□ 0.82
PCDHGA1Q9Y5H4 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.16■□□□□ 0.82
PCDHGA1Q9Y5H4 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
PCDHGA1Q9Y5H4 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA1Q9Y5H4 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
PCDHGA1Q9Y5H4 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA1Q9Y5H4 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA1Q9Y5H4 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.16■□□□□ 0.82
PCDHGA1Q9Y5H4 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA1Q9Y5H4 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.15■□□□□ 0.82
PCDHGA1Q9Y5H4 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA1Q9Y5H4 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA1Q9Y5H4 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.15■□□□□ 0.82
PCDHGA1Q9Y5H4 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
PCDHGA1Q9Y5H4 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA1Q9Y5H4 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA1Q9Y5H4 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA1Q9Y5H4 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA1Q9Y5H4 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.15■□□□□ 0.82
PCDHGA1Q9Y5H4 PNMA6B-201ENST00000538162 1200 ntBASIC20.15■□□□□ 0.82
PCDHGA1Q9Y5H4 AC073912.3-201ENST00000624414 853 ntBASIC20.15■□□□□ 0.82
PCDHGA1Q9Y5H4 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.15■□□□□ 0.82
PCDHGA1Q9Y5H4 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms