Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 TPRG1LP1-201ENST00000598702 760 ntBASIC18.68■□□□□ 0.58
VSX1Q9NZR4 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 RALB-208ENST00000631312 311 ntTSL 5 BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.68■□□□□ 0.58
VSX1Q9NZR4 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VSX1Q9NZR4 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VSX1Q9NZR4 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VSX1Q9NZR4 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VSX1Q9NZR4 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VSX1Q9NZR4 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
VSX1Q9NZR4 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VSX1Q9NZR4 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC18.67■□□□□ 0.58
VSX1Q9NZR4 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.67■□□□□ 0.58
VSX1Q9NZR4 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VSX1Q9NZR4 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VSX1Q9NZR4 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
VSX1Q9NZR4 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VSX1Q9NZR4 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.67■□□□□ 0.58
VSX1Q9NZR4 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.67■□□□□ 0.58
VSX1Q9NZR4 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 EEF1DP3-203ENST00000566025 782 ntBASIC18.66■□□□□ 0.58
VSX1Q9NZR4 AC142381.2-201ENST00000566120 298 ntBASIC18.66■□□□□ 0.58
VSX1Q9NZR4 AL358852.1-201ENST00000623174 1268 ntBASIC18.66■□□□□ 0.58
VSX1Q9NZR4 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VSX1Q9NZR4 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
VSX1Q9NZR4 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VSX1Q9NZR4 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
VSX1Q9NZR4 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VSX1Q9NZR4 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.65■□□□□ 0.58
VSX1Q9NZR4 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VSX1Q9NZR4 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VSX1Q9NZR4 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VSX1Q9NZR4 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.65■□□□□ 0.58
VSX1Q9NZR4 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC18.65■□□□□ 0.58
VSX1Q9NZR4 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC18.65■□□□□ 0.58
VSX1Q9NZR4 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
VSX1Q9NZR4 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VSX1Q9NZR4 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VSX1Q9NZR4 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.65■□□□□ 0.58
VSX1Q9NZR4 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VSX1Q9NZR4 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VSX1Q9NZR4 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.65■□□□□ 0.58
VSX1Q9NZR4 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.64■□□□□ 0.58
VSX1Q9NZR4 MFF-207ENST00000409565 1548 ntTSL 2 BASIC18.64■□□□□ 0.58
VSX1Q9NZR4 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VSX1Q9NZR4 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VSX1Q9NZR4 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
VSX1Q9NZR4 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
VSX1Q9NZR4 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VSX1Q9NZR4 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VSX1Q9NZR4 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VSX1Q9NZR4 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VSX1Q9NZR4 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.64■□□□□ 0.57
VSX1Q9NZR4 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.64■□□□□ 0.57
VSX1Q9NZR4 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.64■□□□□ 0.57
VSX1Q9NZR4 AC053503.5-201ENST00000601508 636 ntBASIC18.64■□□□□ 0.57
VSX1Q9NZR4 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VSX1Q9NZR4 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.64■□□□□ 0.57
VSX1Q9NZR4 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VSX1Q9NZR4 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VSX1Q9NZR4 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VSX1Q9NZR4 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms