Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
TRIM56Q9BRZ2 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM56Q9BRZ2 AC073130.3-201ENST00000624389 2278 ntBASIC21.33■■□□□ 1.01
TRIM56Q9BRZ2 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.33■■□□□ 1.01
TRIM56Q9BRZ2 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM56Q9BRZ2 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC21.33■■□□□ 1.01
TRIM56Q9BRZ2 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.33■■□□□ 1
TRIM56Q9BRZ2 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.33■■□□□ 1
TRIM56Q9BRZ2 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TRIM56Q9BRZ2 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.33■■□□□ 1
TRIM56Q9BRZ2 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
TRIM56Q9BRZ2 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.32■■□□□ 1
TRIM56Q9BRZ2 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 AL031432.3-201ENST00000607698 485 ntBASIC21.32■■□□□ 1
TRIM56Q9BRZ2 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM56Q9BRZ2 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRIM56Q9BRZ2 AL049796.1-201ENST00000565336 1766 ntBASIC21.31■■□□□ 1
TRIM56Q9BRZ2 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRIM56Q9BRZ2 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM56Q9BRZ2 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.31■■□□□ 1
TRIM56Q9BRZ2 AF213884.3-201ENST00000563833 479 ntBASIC21.31■■□□□ 1
TRIM56Q9BRZ2 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM56Q9BRZ2 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM56Q9BRZ2 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.31■■□□□ 1
TRIM56Q9BRZ2 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM56Q9BRZ2 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM56Q9BRZ2 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.31■■□□□ 1
TRIM56Q9BRZ2 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM56Q9BRZ2 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM56Q9BRZ2 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM56Q9BRZ2 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.3■■□□□ 1
TRIM56Q9BRZ2 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM56Q9BRZ2 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.3■■□□□ 1
TRIM56Q9BRZ2 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
TRIM56Q9BRZ2 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 AC027682.1-201ENST00000562846 899 ntBASIC21.29■■□□□ 1
TRIM56Q9BRZ2 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM56Q9BRZ2 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
TRIM56Q9BRZ2 AC055733.4-201ENST00000638462 1354 ntBASIC21.28■■□□□ 1
TRIM56Q9BRZ2 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM56Q9BRZ2 MIR939-201ENST00000401314 82 ntBASIC21.28■■□□□ 1
TRIM56Q9BRZ2 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.28■■□□□ 1
TRIM56Q9BRZ2 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.28■■□□□ 1
TRIM56Q9BRZ2 AC105233.4-201ENST00000642045 216 ntBASIC21.28■■□□□ 1
TRIM56Q9BRZ2 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.28■■□□□ 1
TRIM56Q9BRZ2 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM56Q9BRZ2 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM56Q9BRZ2 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM56Q9BRZ2 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.28■■□□□ 1
TRIM56Q9BRZ2 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM56Q9BRZ2 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.28■■□□□ 1
TRIM56Q9BRZ2 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM56Q9BRZ2 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM56Q9BRZ2 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM56Q9BRZ2 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.27■■□□□ 1
TRIM56Q9BRZ2 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.27■■□□□ 1
TRIM56Q9BRZ2 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRIM56Q9BRZ2 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.27■■□□□ 1
TRIM56Q9BRZ2 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.27■■□□□ 1
TRIM56Q9BRZ2 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.27■■□□□ 1
TRIM56Q9BRZ2 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM56Q9BRZ2 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRIM56Q9BRZ2 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM56Q9BRZ2 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms