Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CPNE4Q96A23 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CPNE4Q96A23 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CPNE4Q96A23 AC004911.1-201ENST00000416316 871 ntBASIC18.81■□□□□ 0.6
CPNE4Q96A23 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.81■□□□□ 0.6
CPNE4Q96A23 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.81■□□□□ 0.6
CPNE4Q96A23 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.81■□□□□ 0.6
CPNE4Q96A23 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.81■□□□□ 0.6
CPNE4Q96A23 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CPNE4Q96A23 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CPNE4Q96A23 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CPNE4Q96A23 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CPNE4Q96A23 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
CPNE4Q96A23 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CPNE4Q96A23 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC18.8■□□□□ 0.6
CPNE4Q96A23 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CPNE4Q96A23 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CPNE4Q96A23 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CPNE4Q96A23 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CPNE4Q96A23 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CPNE4Q96A23 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CPNE4Q96A23 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CPNE4Q96A23 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CPNE4Q96A23 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CPNE4Q96A23 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
CPNE4Q96A23 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CPNE4Q96A23 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CPNE4Q96A23 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CPNE4Q96A23 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CPNE4Q96A23 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.8■□□□□ 0.6
CPNE4Q96A23 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CPNE4Q96A23 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.8■□□□□ 0.6
CPNE4Q96A23 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.8■□□□□ 0.6
CPNE4Q96A23 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CPNE4Q96A23 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CPNE4Q96A23 AL121603.2-201ENST00000557373 2117 ntBASIC18.8■□□□□ 0.6
CPNE4Q96A23 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.8■□□□□ 0.6
CPNE4Q96A23 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CPNE4Q96A23 AC061975.6-201ENST00000579045 1553 ntBASIC18.8■□□□□ 0.6
CPNE4Q96A23 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CPNE4Q96A23 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.8■□□□□ 0.6
CPNE4Q96A23 AC244015.2-201ENST00000616358 1861 ntBASIC18.8■□□□□ 0.6
CPNE4Q96A23 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CPNE4Q96A23 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.79■□□□□ 0.6
CPNE4Q96A23 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.79■□□□□ 0.6
CPNE4Q96A23 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CPNE4Q96A23 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.79■□□□□ 0.6
CPNE4Q96A23 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.79■□□□□ 0.6
CPNE4Q96A23 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CPNE4Q96A23 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CPNE4Q96A23 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CPNE4Q96A23 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
CPNE4Q96A23 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CPNE4Q96A23 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CPNE4Q96A23 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CPNE4Q96A23 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18.79■□□□□ 0.6
CPNE4Q96A23 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.79■□□□□ 0.6
CPNE4Q96A23 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CPNE4Q96A23 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.79■□□□□ 0.6
CPNE4Q96A23 FBXW4P1-201ENST00000426721 2239 ntBASIC18.79■□□□□ 0.6
CPNE4Q96A23 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
CPNE4Q96A23 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CPNE4Q96A23 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CPNE4Q96A23 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CPNE4Q96A23 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CPNE4Q96A23 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.79■□□□□ 0.6
CPNE4Q96A23 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC18.79■□□□□ 0.6
CPNE4Q96A23 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CPNE4Q96A23 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.78■□□□□ 0.6
CPNE4Q96A23 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.78■□□□□ 0.6
CPNE4Q96A23 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CPNE4Q96A23 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CPNE4Q96A23 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CPNE4Q96A23 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CPNE4Q96A23 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CPNE4Q96A23 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CPNE4Q96A23 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CPNE4Q96A23 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CPNE4Q96A23 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.78■□□□□ 0.6
CPNE4Q96A23 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.78■□□□□ 0.6
CPNE4Q96A23 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.78■□□□□ 0.6
CPNE4Q96A23 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
CPNE4Q96A23 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.78■□□□□ 0.6
CPNE4Q96A23 SLC7A5P2-201ENST00000553010 536 ntBASIC18.78■□□□□ 0.6
CPNE4Q96A23 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.78■□□□□ 0.6
CPNE4Q96A23 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CPNE4Q96A23 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.78■□□□□ 0.6
CPNE4Q96A23 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.78■□□□□ 0.6
CPNE4Q96A23 AC011767.1-201ENST00000617410 1153 ntBASIC18.78■□□□□ 0.6
CPNE4Q96A23 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.78■□□□□ 0.6
CPNE4Q96A23 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.78■□□□□ 0.6
CPNE4Q96A23 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.78■□□□□ 0.6
CPNE4Q96A23 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CPNE4Q96A23 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CPNE4Q96A23 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CPNE4Q96A23 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.77■□□□□ 0.6
CPNE4Q96A23 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CPNE4Q96A23 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CPNE4Q96A23 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CPNE4Q96A23 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms