Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SUMO3P55854 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.04■□□□□ 0.64
SUMO3P55854 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
SUMO3P55854 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
SUMO3P55854 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SUMO3P55854 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SUMO3P55854 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.03■□□□□ 0.64
SUMO3P55854 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
SUMO3P55854 KRT18P11-201ENST00000435214 1283 ntBASIC19.03■□□□□ 0.64
SUMO3P55854 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.03■□□□□ 0.64
SUMO3P55854 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.03■□□□□ 0.64
SUMO3P55854 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.03■□□□□ 0.64
SUMO3P55854 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SUMO3P55854 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SUMO3P55854 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SUMO3P55854 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.02■□□□□ 0.64
SUMO3P55854 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SUMO3P55854 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
SUMO3P55854 AC026310.3-201ENST00000625186 2373 ntBASIC19.02■□□□□ 0.64
SUMO3P55854 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SUMO3P55854 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SUMO3P55854 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.02■□□□□ 0.64
SUMO3P55854 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.02■□□□□ 0.64
SUMO3P55854 FEM1AP4-201ENST00000443167 1987 ntBASIC19.02■□□□□ 0.64
SUMO3P55854 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SUMO3P55854 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SUMO3P55854 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SUMO3P55854 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
SUMO3P55854 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.01■□□□□ 0.63
SUMO3P55854 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SUMO3P55854 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.01■□□□□ 0.63
SUMO3P55854 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SUMO3P55854 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SUMO3P55854 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SUMO3P55854 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SUMO3P55854 AC245052.3-201ENST00000450182 901 ntBASIC19.01■□□□□ 0.63
SUMO3P55854 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.01■□□□□ 0.63
SUMO3P55854 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.01■□□□□ 0.63
SUMO3P55854 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SUMO3P55854 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.01■□□□□ 0.63
SUMO3P55854 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SUMO3P55854 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SUMO3P55854 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SUMO3P55854 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SUMO3P55854 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SUMO3P55854 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19■□□□□ 0.63
SUMO3P55854 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SUMO3P55854 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
SUMO3P55854 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19■□□□□ 0.63
SUMO3P55854 PKD1P6-201ENST00000343738 4769 ntBASIC19■□□□□ 0.63
SUMO3P55854 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
SUMO3P55854 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19■□□□□ 0.63
SUMO3P55854 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19■□□□□ 0.63
SUMO3P55854 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19■□□□□ 0.63
SUMO3P55854 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SUMO3P55854 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19■□□□□ 0.63
SUMO3P55854 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SUMO3P55854 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SUMO3P55854 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19■□□□□ 0.63
SUMO3P55854 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SUMO3P55854 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SUMO3P55854 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SUMO3P55854 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SUMO3P55854 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SUMO3P55854 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.99■□□□□ 0.63
SUMO3P55854 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SUMO3P55854 AL049796.1-201ENST00000565336 1766 ntBASIC18.99■□□□□ 0.63
SUMO3P55854 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SUMO3P55854 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SUMO3P55854 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.99■□□□□ 0.63
SUMO3P55854 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SUMO3P55854 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.99■□□□□ 0.63
SUMO3P55854 SLC7A5P2-201ENST00000553010 536 ntBASIC18.99■□□□□ 0.63
SUMO3P55854 AC137761.2-201ENST00000561729 223 ntBASIC18.99■□□□□ 0.63
SUMO3P55854 AC145350.3-201ENST00000569033 163 ntBASIC18.99■□□□□ 0.63
SUMO3P55854 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.99■□□□□ 0.63
SUMO3P55854 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.99■□□□□ 0.63
SUMO3P55854 MYCNOS-205ENST00000641950 531 ntBASIC18.99■□□□□ 0.63
SUMO3P55854 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SUMO3P55854 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SUMO3P55854 AL024507.2-201ENST00000606070 2574 ntBASIC18.99■□□□□ 0.63
SUMO3P55854 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SUMO3P55854 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SUMO3P55854 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
SUMO3P55854 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SUMO3P55854 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SUMO3P55854 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.98■□□□□ 0.63
SUMO3P55854 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.98■□□□□ 0.63
SUMO3P55854 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SUMO3P55854 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.98■□□□□ 0.63
SUMO3P55854 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC18.98■□□□□ 0.63
SUMO3P55854 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.98■□□□□ 0.63
SUMO3P55854 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
SUMO3P55854 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.98■□□□□ 0.63
SUMO3P55854 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
SUMO3P55854 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.98■□□□□ 0.63
SUMO3P55854 UBE2DNL-204ENST00000602536 740 ntBASIC18.98■□□□□ 0.63
SUMO3P55854 AC243732.1-201ENST00000612648 864 ntBASIC18.98■□□□□ 0.63
SUMO3P55854 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SUMO3P55854 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms