Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
HOXD4P09016 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
HOXD4P09016 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HOXD4P09016 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXD4P09016 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXD4P09016 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXD4P09016 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXD4P09016 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC18.96■□□□□ 0.63
HOXD4P09016 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXD4P09016 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
HOXD4P09016 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXD4P09016 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXD4P09016 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXD4P09016 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.96■□□□□ 0.63
HOXD4P09016 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXD4P09016 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HOXD4P09016 AC087742.1-201ENST00000575880 1738 ntBASIC18.96■□□□□ 0.63
HOXD4P09016 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC18.96■□□□□ 0.63
HOXD4P09016 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXD4P09016 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXD4P09016 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HOXD4P09016 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXD4P09016 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
HOXD4P09016 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXD4P09016 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXD4P09016 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXD4P09016 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.95■□□□□ 0.62
HOXD4P09016 SLC29A4P1-201ENST00000398760 971 ntBASIC18.95■□□□□ 0.62
HOXD4P09016 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.95■□□□□ 0.62
HOXD4P09016 TERF1P5-201ENST00000477545 1207 ntBASIC18.95■□□□□ 0.62
HOXD4P09016 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HOXD4P09016 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.95■□□□□ 0.62
HOXD4P09016 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.95■□□□□ 0.62
HOXD4P09016 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
HOXD4P09016 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.95■□□□□ 0.62
HOXD4P09016 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXD4P09016 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC18.95■□□□□ 0.62
HOXD4P09016 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HOXD4P09016 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXD4P09016 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.95■□□□□ 0.62
HOXD4P09016 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC18.95■□□□□ 0.62
HOXD4P09016 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.94■□□□□ 0.62
HOXD4P09016 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXD4P09016 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HOXD4P09016 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXD4P09016 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC18.94■□□□□ 0.62
HOXD4P09016 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.94■□□□□ 0.62
HOXD4P09016 TSPY6P-201ENST00000448518 926 ntBASIC18.94■□□□□ 0.62
HOXD4P09016 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.94■□□□□ 0.62
HOXD4P09016 AF201337.1-201ENST00000520239 748 ntBASIC18.94■□□□□ 0.62
HOXD4P09016 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXD4P09016 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.94■□□□□ 0.62
HOXD4P09016 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXD4P09016 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXD4P09016 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HOXD4P09016 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXD4P09016 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXD4P09016 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXD4P09016 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXD4P09016 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXD4P09016 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXD4P09016 AC007322.4-201ENST00000509611 723 ntBASIC18.93■□□□□ 0.62
HOXD4P09016 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.93■□□□□ 0.62
HOXD4P09016 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXD4P09016 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.93■□□□□ 0.62
HOXD4P09016 AL050303.2-201ENST00000619798 666 ntBASIC18.93■□□□□ 0.62
HOXD4P09016 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.93■□□□□ 0.62
HOXD4P09016 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.93■□□□□ 0.62
HOXD4P09016 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXD4P09016 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXD4P09016 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXD4P09016 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXD4P09016 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.92■□□□□ 0.62
HOXD4P09016 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
HOXD4P09016 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HOXD4P09016 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXD4P09016 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXD4P09016 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.92■□□□□ 0.62
HOXD4P09016 CNN2P6-201ENST00000439038 900 ntBASIC18.92■□□□□ 0.62
HOXD4P09016 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.92■□□□□ 0.62
HOXD4P09016 SLC7A5P2-201ENST00000553010 536 ntBASIC18.92■□□□□ 0.62
HOXD4P09016 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXD4P09016 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXD4P09016 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXD4P09016 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.92■□□□□ 0.62
HOXD4P09016 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HOXD4P09016 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXD4P09016 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXD4P09016 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
HOXD4P09016 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXD4P09016 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXD4P09016 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXD4P09016 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXD4P09016 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC18.92■□□□□ 0.62
HOXD4P09016 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HOXD4P09016 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC18.91■□□□□ 0.62
HOXD4P09016 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HOXD4P09016 NAA20-201ENST00000310450 920 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXD4P09016 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
HOXD4P09016 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms