Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC28.1■■■□□ 2.09
MSH5O43196 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC28.1■■■□□ 2.09
MSH5O43196 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC28.1■■■□□ 2.09
MSH5O43196 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
MSH5O43196 AC005181.1-201ENST00000604782 1256 ntBASIC28.1■■■□□ 2.09
MSH5O43196 TCEAL4-213ENST00000613326 1166 ntAPPRIS ALT2 TSL 2 BASIC28.1■■■□□ 2.09
MSH5O43196 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC28.1■■■□□ 2.09
MSH5O43196 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
MSH5O43196 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC28.1■■■□□ 2.09
MSH5O43196 AC026310.3-201ENST00000625186 2373 ntBASIC28.1■■■□□ 2.09
MSH5O43196 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
MSH5O43196 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
MSH5O43196 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC28.09■■■□□ 2.09
MSH5O43196 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
MSH5O43196 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
MSH5O43196 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
MSH5O43196 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
MSH5O43196 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC28.09■■■□□ 2.09
MSH5O43196 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC28.09■■■□□ 2.09
MSH5O43196 RGMA-211ENST00000557420 989 ntTSL 3 BASIC28.09■■■□□ 2.09
MSH5O43196 AC002558.2-201ENST00000572193 673 ntTSL 3 BASIC28.09■■■□□ 2.09
MSH5O43196 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC28.09■■■□□ 2.09
MSH5O43196 TFG-210ENST00000620299 1289 ntTSL 5 BASIC28.09■■■□□ 2.09
MSH5O43196 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
MSH5O43196 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
MSH5O43196 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC28.09■■■□□ 2.09
MSH5O43196 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC28.09■■■□□ 2.09
MSH5O43196 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
MSH5O43196 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC28.09■■■□□ 2.09
MSH5O43196 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
MSH5O43196 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC28.08■■■□□ 2.09
MSH5O43196 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.08■■■□□ 2.09
MSH5O43196 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
MSH5O43196 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
MSH5O43196 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
MSH5O43196 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
MSH5O43196 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
MSH5O43196 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC28.08■■■□□ 2.09
MSH5O43196 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
MSH5O43196 HSFY1P1-201ENST00000423928 1178 ntBASIC28.08■■■□□ 2.09
MSH5O43196 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC28.08■■■□□ 2.09
MSH5O43196 AC007322.1-201ENST00000426983 750 ntBASIC28.08■■■□□ 2.09
MSH5O43196 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC28.08■■■□□ 2.09
MSH5O43196 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC28.08■■■□□ 2.09
MSH5O43196 SLC7A5P2-201ENST00000553010 536 ntBASIC28.08■■■□□ 2.09
MSH5O43196 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
MSH5O43196 AC008687.6-201ENST00000596318 630 ntBASIC28.08■■■□□ 2.09
MSH5O43196 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC28.08■■■□□ 2.09
MSH5O43196 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
MSH5O43196 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC28.08■■■□□ 2.09
MSH5O43196 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
MSH5O43196 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
MSH5O43196 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
MSH5O43196 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
MSH5O43196 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.08
MSH5O43196 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC28.08■■■□□ 2.08
MSH5O43196 COMT-203ENST00000403184 2217 ntTSL 2 BASIC28.07■■■□□ 2.08
MSH5O43196 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
MSH5O43196 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC28.07■■■□□ 2.08
MSH5O43196 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
MSH5O43196 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC28.07■■■□□ 2.08
MSH5O43196 METTL15-202ENST00000403099 795 ntTSL 5 BASIC28.07■■■□□ 2.08
MSH5O43196 GUSBP6-202ENST00000438529 1198 ntBASIC28.07■■■□□ 2.08
MSH5O43196 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC28.07■■■□□ 2.08
MSH5O43196 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
MSH5O43196 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC28.07■■■□□ 2.08
MSH5O43196 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC28.07■■■□□ 2.08
MSH5O43196 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC28.07■■■□□ 2.08
MSH5O43196 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC28.07■■■□□ 2.08
MSH5O43196 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC28.07■■■□□ 2.08
MSH5O43196 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC28.07■■■□□ 2.08
MSH5O43196 PALM-208ENST00000592155 2272 ntTSL 4 BASIC28.07■■■□□ 2.08
MSH5O43196 AC144652.1-201ENST00000609974 1624 ntBASIC28.07■■■□□ 2.08
MSH5O43196 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC28.06■■■□□ 2.08
MSH5O43196 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
MSH5O43196 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
MSH5O43196 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC28.06■■■□□ 2.08
MSH5O43196 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC28.06■■■□□ 2.08
MSH5O43196 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC28.06■■■□□ 2.08
MSH5O43196 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC28.06■■■□□ 2.08
MSH5O43196 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC28.06■■■□□ 2.08
MSH5O43196 AC087239.1-201ENST00000622671 572 ntBASIC28.06■■■□□ 2.08
MSH5O43196 AC231657.2-201ENST00000624556 255 ntBASIC28.06■■■□□ 2.08
MSH5O43196 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC28.06■■■□□ 2.08
MSH5O43196 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
MSH5O43196 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC28.06■■■□□ 2.08
MSH5O43196 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
MSH5O43196 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
MSH5O43196 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
MSH5O43196 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
MSH5O43196 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC28.06■■■□□ 2.08
MSH5O43196 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
MSH5O43196 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC28.05■■■□□ 2.08
MSH5O43196 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC28.05■■■□□ 2.08
MSH5O43196 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
MSH5O43196 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC28.05■■■□□ 2.08
MSH5O43196 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC28.05■■■□□ 2.08
MSH5O43196 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC28.05■■■□□ 2.08
MSH5O43196 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC28.05■■■□□ 2.08
MSH5O43196 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC28.05■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms