Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC29,27■■■□□ 2,28
Col11a1Q61245 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC29,27■■■□□ 2,28
Col11a1Q61245 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC29,26■■■□□ 2,27
Col11a1Q61245 Gm7432-201ENSMUST00000210343 879 ntBASIC29,26■■■□□ 2,27
Col11a1Q61245 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC29,25■■■□□ 2,27
Col11a1Q61245 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC29,24■■■□□ 2,27
Col11a1Q61245 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC29,24■■■□□ 2,27
Col11a1Q61245 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC29,22■■■□□ 2,27
Col11a1Q61245 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC29,22■■■□□ 2,27
Col11a1Q61245 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC29,22■■■□□ 2,27
Col11a1Q61245 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC29,22■■■□□ 2,27
Col11a1Q61245 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC29,21■■■□□ 2,27
Col11a1Q61245 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC29,21■■■□□ 2,27
Col11a1Q61245 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC29,21■■■□□ 2,27
Col11a1Q61245 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC29,2■■■□□ 2,27
Col11a1Q61245 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC29,2■■■□□ 2,26
Col11a1Q61245 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC29,19■■■□□ 2,26
Col11a1Q61245 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC29,18■■■□□ 2,26
Col11a1Q61245 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC29,18■■■□□ 2,26
Col11a1Q61245 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC29,18■■■□□ 2,26
Col11a1Q61245 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC29,17■■■□□ 2,26
Col11a1Q61245 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC29,17■■■□□ 2,26
Col11a1Q61245 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC29,16■■■□□ 2,26
Col11a1Q61245 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC29,15■■■□□ 2,26
Col11a1Q61245 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC29,15■■■□□ 2,26
Col11a1Q61245 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC29,15■■■□□ 2,26
Col11a1Q61245 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC29,14■■■□□ 2,25
Col11a1Q61245 Gm11599-201ENSMUST00000118720 878 ntBASIC29,13■■■□□ 2,25
Col11a1Q61245 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC29,13■■■□□ 2,25
Col11a1Q61245 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC29,13■■■□□ 2,25
Col11a1Q61245 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC29,11■■■□□ 2,25
Col11a1Q61245 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC29,11■■■□□ 2,25
Col11a1Q61245 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC29,11■■■□□ 2,25
Col11a1Q61245 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC29,11■■■□□ 2,25
Col11a1Q61245 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC29,1■■■□□ 2,25
Col11a1Q61245 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC29,1■■■□□ 2,25
Col11a1Q61245 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC29,09■■■□□ 2,25
Col11a1Q61245 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC29,08■■■□□ 2,25
Col11a1Q61245 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC29,08■■■□□ 2,25
Col11a1Q61245 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC29,07■■■□□ 2,24
Col11a1Q61245 Mir6538-201ENSMUST00000183713 110 ntBASIC29,07■■■□□ 2,24
Col11a1Q61245 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC29,07■■■□□ 2,24
Col11a1Q61245 Gm11175-201ENSMUST00000116172 543 ntBASIC29,05■■■□□ 2,24
Col11a1Q61245 Gm30346-201ENSMUST00000218641 1699 ntBASIC29,05■■■□□ 2,24
Col11a1Q61245 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC29,04■■■□□ 2,24
Col11a1Q61245 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC29,03■■■□□ 2,24
Col11a1Q61245 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC29■■■□□ 2,23
Col11a1Q61245 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC28,99■■■□□ 2,23
Col11a1Q61245 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC28,99■■■□□ 2,23
Col11a1Q61245 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC28,97■■■□□ 2,23
Col11a1Q61245 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC28,97■■■□□ 2,23
Col11a1Q61245 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC28,97■■■□□ 2,23
Col11a1Q61245 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC28,96■■■□□ 2,23
Col11a1Q61245 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC28,96■■■□□ 2,23
Col11a1Q61245 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC28,96■■■□□ 2,23
Col11a1Q61245 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC28,94■■■□□ 2,22
Col11a1Q61245 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC28,94■■■□□ 2,22
Col11a1Q61245 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC28,94■■■□□ 2,22
Col11a1Q61245 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC28,94■■■□□ 2,22
Col11a1Q61245 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC28,93■■■□□ 2,22
Col11a1Q61245 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC28,93■■■□□ 2,22
Col11a1Q61245 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC28,93■■■□□ 2,22
Col11a1Q61245 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC28,92■■■□□ 2,22
Col11a1Q61245 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC28,92■■■□□ 2,22
Col11a1Q61245 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC28,91■■■□□ 2,22
Col11a1Q61245 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC28,9■■■□□ 2,22
Col11a1Q61245 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC28,9■■■□□ 2,22
Col11a1Q61245 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC28,9■■■□□ 2,22
Col11a1Q61245 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC28,9■■■□□ 2,22
Col11a1Q61245 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC28,88■■■□□ 2,21
Col11a1Q61245 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC28,88■■■□□ 2,21
Col11a1Q61245 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC28,88■■■□□ 2,21
Col11a1Q61245 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC28,86■■■□□ 2,21
Col11a1Q61245 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC28,86■■■□□ 2,21
Col11a1Q61245 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC28,86■■■□□ 2,21
Col11a1Q61245 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC28,86■■■□□ 2,21
Col11a1Q61245 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC28,84■■■□□ 2,21
Col11a1Q61245 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC28,83■■■□□ 2,21
Col11a1Q61245 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC28,8■■■□□ 2,2
Col11a1Q61245 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC28,8■■■□□ 2,2
Col11a1Q61245 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC28,79■■■□□ 2,2
Col11a1Q61245 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC28,79■■■□□ 2,2
Col11a1Q61245 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC28,78■■■□□ 2,2
Col11a1Q61245 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC28,78■■■□□ 2,2
Col11a1Q61245 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC28,77■■■□□ 2,2
Col11a1Q61245 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC28,76■■■□□ 2,19
Col11a1Q61245 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC28,76■■■□□ 2,19
Col11a1Q61245 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC28,76■■■□□ 2,19
Col11a1Q61245 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC28,76■■■□□ 2,19
Col11a1Q61245 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC28,75■■■□□ 2,19
Col11a1Q61245 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC28,74■■■□□ 2,19
Col11a1Q61245 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC28,74■■■□□ 2,19
Col11a1Q61245 Cap2-205ENSMUST00000225824 1634 ntBASIC28,71■■■□□ 2,19
Col11a1Q61245 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC28,71■■■□□ 2,19
Col11a1Q61245 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC28,71■■■□□ 2,19
Col11a1Q61245 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC28,7■■■□□ 2,18
Col11a1Q61245 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC28,7■■■□□ 2,18
Col11a1Q61245 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC28,69■■■□□ 2,18
Col11a1Q61245 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC28,69■■■□□ 2,18
Col11a1Q61245 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC28,68■■■□□ 2,18
Retrieved 100 of 76,532 protein–RNA pairs in 28,2 ms