Protein–RNA interactions for Protein: Q3V0C5

Usp48, Ubiquitin carboxyl-terminal hydrolase 48, mousemouse

Predictions only

Length 1,052 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp48Q3V0C5 Gm7432-201ENSMUST00000210343 879 ntBASIC30.69■■■□□ 2.5
Usp48Q3V0C5 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
Usp48Q3V0C5 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC30.67■■■□□ 2.5
Usp48Q3V0C5 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
Usp48Q3V0C5 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
Usp48Q3V0C5 Nkain2-201ENSMUST00000092602 558 ntBASIC30.66■■■□□ 2.5
Usp48Q3V0C5 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Usp48Q3V0C5 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
Usp48Q3V0C5 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
Usp48Q3V0C5 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Usp48Q3V0C5 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Usp48Q3V0C5 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
Usp48Q3V0C5 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC30.64■■■□□ 2.5
Usp48Q3V0C5 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Usp48Q3V0C5 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Usp48Q3V0C5 AC153504.1-201ENSMUST00000218379 2290 ntBASIC30.63■■■□□ 2.49
Usp48Q3V0C5 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
Usp48Q3V0C5 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC30.62■■■□□ 2.49
Usp48Q3V0C5 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
Usp48Q3V0C5 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
Usp48Q3V0C5 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Usp48Q3V0C5 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Usp48Q3V0C5 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Usp48Q3V0C5 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC30.56■■■□□ 2.48
Usp48Q3V0C5 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC30.56■■■□□ 2.48
Usp48Q3V0C5 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC30.54■■■□□ 2.48
Usp48Q3V0C5 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC30.54■■■□□ 2.48
Usp48Q3V0C5 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC30.53■■■□□ 2.48
Usp48Q3V0C5 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.48
Usp48Q3V0C5 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
Usp48Q3V0C5 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC30.51■■■□□ 2.47
Usp48Q3V0C5 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Usp48Q3V0C5 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC30.49■■■□□ 2.47
Usp48Q3V0C5 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC30.49■■■□□ 2.47
Usp48Q3V0C5 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Usp48Q3V0C5 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC30.48■■■□□ 2.47
Usp48Q3V0C5 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
Usp48Q3V0C5 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
Usp48Q3V0C5 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
Usp48Q3V0C5 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Usp48Q3V0C5 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
Usp48Q3V0C5 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Usp48Q3V0C5 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
Usp48Q3V0C5 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC30.44■■■□□ 2.46
Usp48Q3V0C5 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Usp48Q3V0C5 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Usp48Q3V0C5 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC30.43■■■□□ 2.46
Usp48Q3V0C5 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
Usp48Q3V0C5 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
Usp48Q3V0C5 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Usp48Q3V0C5 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Usp48Q3V0C5 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
Usp48Q3V0C5 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
Usp48Q3V0C5 Gm11599-201ENSMUST00000118720 878 ntBASIC30.41■■■□□ 2.46
Usp48Q3V0C5 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC30.4■■■□□ 2.46
Usp48Q3V0C5 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC30.4■■■□□ 2.46
Usp48Q3V0C5 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Usp48Q3V0C5 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Usp48Q3V0C5 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
Usp48Q3V0C5 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Usp48Q3V0C5 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Usp48Q3V0C5 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Usp48Q3V0C5 Mir6538-201ENSMUST00000183713 110 ntBASIC30.35■■■□□ 2.45
Usp48Q3V0C5 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC30.35■■■□□ 2.45
Usp48Q3V0C5 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Usp48Q3V0C5 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Usp48Q3V0C5 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
Usp48Q3V0C5 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC30.34■■■□□ 2.45
Usp48Q3V0C5 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
Usp48Q3V0C5 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
Usp48Q3V0C5 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Usp48Q3V0C5 Gm11175-201ENSMUST00000116172 543 ntBASIC30.3■■■□□ 2.44
Usp48Q3V0C5 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC30.3■■■□□ 2.44
Usp48Q3V0C5 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC30.29■■■□□ 2.44
Usp48Q3V0C5 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC30.29■■■□□ 2.44
Usp48Q3V0C5 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
Usp48Q3V0C5 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC30.27■■■□□ 2.44
Usp48Q3V0C5 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC30.27■■■□□ 2.44
Usp48Q3V0C5 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC30.27■■■□□ 2.44
Usp48Q3V0C5 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC30.26■■■□□ 2.44
Usp48Q3V0C5 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Usp48Q3V0C5 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.43
Usp48Q3V0C5 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC30.26■■■□□ 2.43
Usp48Q3V0C5 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Usp48Q3V0C5 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Usp48Q3V0C5 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Usp48Q3V0C5 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Usp48Q3V0C5 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC30.24■■■□□ 2.43
Usp48Q3V0C5 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC30.24■■■□□ 2.43
Usp48Q3V0C5 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
Usp48Q3V0C5 Cap2-205ENSMUST00000225824 1634 ntBASIC30.24■■■□□ 2.43
Usp48Q3V0C5 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
Usp48Q3V0C5 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC30.2■■■□□ 2.43
Usp48Q3V0C5 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
Usp48Q3V0C5 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC30.2■■■□□ 2.42
Usp48Q3V0C5 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
Usp48Q3V0C5 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
Usp48Q3V0C5 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC30.16■■■□□ 2.42
Usp48Q3V0C5 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC30.16■■■□□ 2.42
Usp48Q3V0C5 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms