Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Col3a1P08121 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
Col3a1P08121 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Col3a1P08121 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Col3a1P08121 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC30.62■■■□□ 2.49
Col3a1P08121 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Col3a1P08121 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
Col3a1P08121 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
Col3a1P08121 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.49
Col3a1P08121 Gm8503-201ENSMUST00000118131 455 ntBASIC30.59■■■□□ 2.49
Col3a1P08121 Gm9939-201ENSMUST00000067161 1154 ntBASIC30.59■■■□□ 2.49
Col3a1P08121 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC30.57■■■□□ 2.49
Col3a1P08121 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Col3a1P08121 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Col3a1P08121 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Col3a1P08121 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Col3a1P08121 Gm5987-201ENSMUST00000196433 1151 ntBASIC30.55■■■□□ 2.48
Col3a1P08121 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC30.54■■■□□ 2.48
Col3a1P08121 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Col3a1P08121 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC30.52■■■□□ 2.48
Col3a1P08121 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
Col3a1P08121 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Col3a1P08121 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
Col3a1P08121 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
Col3a1P08121 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC30.46■■■□□ 2.47
Col3a1P08121 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Col3a1P08121 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Col3a1P08121 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
Col3a1P08121 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
Col3a1P08121 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Col3a1P08121 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Col3a1P08121 Gm42809-201ENSMUST00000198429 1138 ntBASIC30.44■■■□□ 2.46
Col3a1P08121 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC30.43■■■□□ 2.46
Col3a1P08121 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC30.43■■■□□ 2.46
Col3a1P08121 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Col3a1P08121 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Col3a1P08121 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC30.42■■■□□ 2.46
Col3a1P08121 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Col3a1P08121 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC30.42■■■□□ 2.46
Col3a1P08121 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Col3a1P08121 Gm6821-201ENSMUST00000107540 542 ntBASIC30.4■■■□□ 2.46
Col3a1P08121 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Col3a1P08121 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Col3a1P08121 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Col3a1P08121 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC30.38■■■□□ 2.45
Col3a1P08121 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Col3a1P08121 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC30.36■■■□□ 2.45
Col3a1P08121 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
Col3a1P08121 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
Col3a1P08121 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC30.34■■■□□ 2.45
Col3a1P08121 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
Col3a1P08121 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC30.34■■■□□ 2.45
Col3a1P08121 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Col3a1P08121 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC30.33■■■□□ 2.45
Col3a1P08121 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Col3a1P08121 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC30.31■■■□□ 2.44
Col3a1P08121 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Col3a1P08121 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Col3a1P08121 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC30.29■■■□□ 2.44
Col3a1P08121 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.44
Col3a1P08121 Gm6345-201ENSMUST00000180378 1691 ntBASIC30.26■■■□□ 2.43
Col3a1P08121 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC30.25■■■□□ 2.43
Col3a1P08121 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Col3a1P08121 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Col3a1P08121 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC30.24■■■□□ 2.43
Col3a1P08121 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC30.23■■■□□ 2.43
Col3a1P08121 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC30.23■■■□□ 2.43
Col3a1P08121 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC30.22■■■□□ 2.43
Col3a1P08121 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC30.21■■■□□ 2.43
Col3a1P08121 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
Col3a1P08121 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
Col3a1P08121 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
Col3a1P08121 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
Col3a1P08121 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
Col3a1P08121 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC30.19■■■□□ 2.42
Col3a1P08121 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC30.18■■■□□ 2.42
Col3a1P08121 Nkain2-201ENSMUST00000092602 558 ntBASIC30.18■■■□□ 2.42
Col3a1P08121 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
Col3a1P08121 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
Col3a1P08121 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC30.16■■■□□ 2.42
Col3a1P08121 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC30.15■■■□□ 2.42
Col3a1P08121 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
Col3a1P08121 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC30.14■■■□□ 2.42
Col3a1P08121 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
Col3a1P08121 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC30.13■■■□□ 2.41
Col3a1P08121 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC30.13■■■□□ 2.41
Col3a1P08121 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Col3a1P08121 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Col3a1P08121 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC30.12■■■□□ 2.41
Col3a1P08121 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Col3a1P08121 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC30.06■■■□□ 2.4
Col3a1P08121 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC30.06■■■□□ 2.4
Col3a1P08121 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC30.05■■■□□ 2.4
Col3a1P08121 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
Col3a1P08121 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
Col3a1P08121 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
Col3a1P08121 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC30.02■■■□□ 2.4
Col3a1P08121 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Col3a1P08121 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
Col3a1P08121 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC30■■■□□ 2.39
Retrieved 100 of 76,532 protein–RNA pairs in 83.7 ms