Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 GUSBP6-202ENST00000438529 1198 ntBASIC18.73■□□□□ 0.59
CLCF1Q9UBD9 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.73■□□□□ 0.59
CLCF1Q9UBD9 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.73■□□□□ 0.59
CLCF1Q9UBD9 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.73■□□□□ 0.59
CLCF1Q9UBD9 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CLCF1Q9UBD9 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLCF1Q9UBD9 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC18.73■□□□□ 0.59
CLCF1Q9UBD9 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CLCF1Q9UBD9 RBM17P2-201ENST00000616397 1405 ntBASIC18.73■□□□□ 0.59
CLCF1Q9UBD9 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 AL355802.2-201ENST00000402069 882 ntBASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 TSPY6P-201ENST00000448518 926 ntBASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 AC133552.2-202ENST00000575694 574 ntBASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 AC243732.1-201ENST00000612648 864 ntBASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLCF1Q9UBD9 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLCF1Q9UBD9 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 AF201337.1-201ENST00000520239 748 ntBASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 AC142086.2-201ENST00000569753 217 ntBASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CLCF1Q9UBD9 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLCF1Q9UBD9 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.69■□□□□ 0.58
CLCF1Q9UBD9 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLCF1Q9UBD9 ECEL1P1-201ENST00000373592 1742 ntBASIC18.69■□□□□ 0.58
CLCF1Q9UBD9 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLCF1Q9UBD9 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLCF1Q9UBD9 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC18.69■□□□□ 0.58
CLCF1Q9UBD9 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLCF1Q9UBD9 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLCF1Q9UBD9 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLCF1Q9UBD9 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLCF1Q9UBD9 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLCF1Q9UBD9 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.69■□□□□ 0.58
CLCF1Q9UBD9 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.69■□□□□ 0.58
CLCF1Q9UBD9 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLCF1Q9UBD9 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLCF1Q9UBD9 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLCF1Q9UBD9 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLCF1Q9UBD9 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLCF1Q9UBD9 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLCF1Q9UBD9 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.68■□□□□ 0.58
CLCF1Q9UBD9 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.68■□□□□ 0.58
CLCF1Q9UBD9 AC105036.2-201ENST00000569468 176 ntBASIC18.68■□□□□ 0.58
CLCF1Q9UBD9 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CLCF1Q9UBD9 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLCF1Q9UBD9 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLCF1Q9UBD9 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLCF1Q9UBD9 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms