Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLIP4Q8N3C7 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.61■□□□□ 0.73
CLIP4Q8N3C7 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CLIP4Q8N3C7 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.61■□□□□ 0.73
CLIP4Q8N3C7 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP4Q8N3C7 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.61■□□□□ 0.73
CLIP4Q8N3C7 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP4Q8N3C7 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP4Q8N3C7 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CLIP4Q8N3C7 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
CLIP4Q8N3C7 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.61■□□□□ 0.73
CLIP4Q8N3C7 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
CLIP4Q8N3C7 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP4Q8N3C7 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP4Q8N3C7 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.61■□□□□ 0.73
CLIP4Q8N3C7 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLIP4Q8N3C7 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
CLIP4Q8N3C7 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.6■□□□□ 0.73
CLIP4Q8N3C7 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP4Q8N3C7 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP4Q8N3C7 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.6■□□□□ 0.73
CLIP4Q8N3C7 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
CLIP4Q8N3C7 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP4Q8N3C7 AC099791.1-201ENST00000416440 715 ntBASIC19.6■□□□□ 0.73
CLIP4Q8N3C7 IGHV3-19-201ENST00000521488 291 ntBASIC19.6■□□□□ 0.73
CLIP4Q8N3C7 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP4Q8N3C7 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.6■□□□□ 0.73
CLIP4Q8N3C7 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.6■□□□□ 0.73
CLIP4Q8N3C7 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.6■□□□□ 0.73
CLIP4Q8N3C7 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP4Q8N3C7 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.6■□□□□ 0.73
CLIP4Q8N3C7 AC106739.1-201ENST00000617035 715 ntBASIC19.6■□□□□ 0.73
CLIP4Q8N3C7 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP4Q8N3C7 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP4Q8N3C7 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CLIP4Q8N3C7 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 AC110285.6-201ENST00000617652 491 ntBASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 AC007952.6-201ENST00000573168 2673 ntBASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 AC003957.1-201ENST00000625108 2673 ntBASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 AP006587.3-201ENST00000525742 1516 ntBASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CLIP4Q8N3C7 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.58■□□□□ 0.73
CLIP4Q8N3C7 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CLIP4Q8N3C7 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLIP4Q8N3C7 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLIP4Q8N3C7 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLIP4Q8N3C7 AL157384.1-201ENST00000445995 2473 ntBASIC19.58■□□□□ 0.73
CLIP4Q8N3C7 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLIP4Q8N3C7 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.58■□□□□ 0.72
CLIP4Q8N3C7 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.58■□□□□ 0.72
CLIP4Q8N3C7 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.58■□□□□ 0.72
CLIP4Q8N3C7 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.58■□□□□ 0.72
CLIP4Q8N3C7 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.58■□□□□ 0.72
CLIP4Q8N3C7 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLIP4Q8N3C7 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.58■□□□□ 0.72
CLIP4Q8N3C7 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CLIP4Q8N3C7 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CLIP4Q8N3C7 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLIP4Q8N3C7 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLIP4Q8N3C7 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.58■□□□□ 0.72
CLIP4Q8N3C7 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP4Q8N3C7 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
CLIP4Q8N3C7 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.57■□□□□ 0.72
CLIP4Q8N3C7 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP4Q8N3C7 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP4Q8N3C7 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP4Q8N3C7 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms