Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PRKDCP78527 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC15.46■□□□□ 0.07
PRKDCP78527 AC133681.1-201ENST00000465482 601 ntBASIC15.46■□□□□ 0.07
PRKDCP78527 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC15.46■□□□□ 0.07
PRKDCP78527 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC15.46■□□□□ 0.07
PRKDCP78527 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC15.46■□□□□ 0.07
PRKDCP78527 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC15.46■□□□□ 0.07
PRKDCP78527 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
PRKDCP78527 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC15.46■□□□□ 0.07
PRKDCP78527 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
PRKDCP78527 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC15.45■□□□□ 0.06
PRKDCP78527 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
PRKDCP78527 LY6E-205ENST00000519611 635 ntTSL 3 BASIC15.45■□□□□ 0.06
PRKDCP78527 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC15.45■□□□□ 0.06
PRKDCP78527 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC15.45■□□□□ 0.06
PRKDCP78527 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC15.45■□□□□ 0.06
PRKDCP78527 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKDCP78527 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKDCP78527 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC15.45■□□□□ 0.06
PRKDCP78527 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PRKDCP78527 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKDCP78527 KRT18P56-201ENST00000507275 550 ntBASIC15.45■□□□□ 0.06
PRKDCP78527 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PRKDCP78527 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PRKDCP78527 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PRKDCP78527 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKDCP78527 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PRKDCP78527 DUSP5P1-201ENST00000441325 1139 ntBASIC15.45■□□□□ 0.06
PRKDCP78527 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC15.45■□□□□ 0.06
PRKDCP78527 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC15.45■□□□□ 0.06
PRKDCP78527 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PRKDCP78527 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC15.45■□□□□ 0.06
PRKDCP78527 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKDCP78527 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PRKDCP78527 KRT16P2-201ENST00000414673 1423 ntBASIC15.45■□□□□ 0.06
PRKDCP78527 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
PRKDCP78527 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC15.45■□□□□ 0.06
PRKDCP78527 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC15.45■□□□□ 0.06
PRKDCP78527 UPK3BP1-201ENST00000428678 509 ntBASIC15.45■□□□□ 0.06
PRKDCP78527 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
PRKDCP78527 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC15.45■□□□□ 0.06
PRKDCP78527 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
PRKDCP78527 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PRKDCP78527 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
PRKDCP78527 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PRKDCP78527 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
PRKDCP78527 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC15.44■□□□□ 0.06
PRKDCP78527 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
PRKDCP78527 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
PRKDCP78527 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
PRKDCP78527 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
PRKDCP78527 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
PRKDCP78527 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
PRKDCP78527 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC15.44■□□□□ 0.06
PRKDCP78527 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
PRKDCP78527 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC15.44■□□□□ 0.06
PRKDCP78527 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC15.44■□□□□ 0.06
PRKDCP78527 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC15.44■□□□□ 0.06
PRKDCP78527 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PRKDCP78527 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
PRKDCP78527 CRYGFP-201ENST00000418459 633 ntBASIC15.44■□□□□ 0.06
PRKDCP78527 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC15.44■□□□□ 0.06
PRKDCP78527 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC15.44■□□□□ 0.06
PRKDCP78527 AP001412.1-201ENST00000608405 714 ntBASIC15.44■□□□□ 0.06
PRKDCP78527 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC15.44■□□□□ 0.06
PRKDCP78527 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
PRKDCP78527 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PRKDCP78527 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC15.43■□□□□ 0.06
PRKDCP78527 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
PRKDCP78527 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
PRKDCP78527 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
PRKDCP78527 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC15.43■□□□□ 0.06
PRKDCP78527 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PRKDCP78527 AC026396.1-201ENST00000419388 421 ntBASIC15.43■□□□□ 0.06
PRKDCP78527 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
PRKDCP78527 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
PRKDCP78527 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC15.43■□□□□ 0.06
PRKDCP78527 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC15.43■□□□□ 0.06
PRKDCP78527 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
PRKDCP78527 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
PRKDCP78527 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC15.43■□□□□ 0.06
PRKDCP78527 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
PRKDCP78527 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PRKDCP78527 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PRKDCP78527 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PRKDCP78527 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
PRKDCP78527 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PRKDCP78527 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC15.42■□□□□ 0.06
PRKDCP78527 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
PRKDCP78527 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PRKDCP78527 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PRKDCP78527 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PRKDCP78527 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC15.42■□□□□ 0.06
PRKDCP78527 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PRKDCP78527 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PRKDCP78527 AP004607.7-201ENST00000527152 1677 ntBASIC15.42■□□□□ 0.06
PRKDCP78527 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PRKDCP78527 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
PRKDCP78527 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PRKDCP78527 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms